RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PTK2Q05397 1052 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 ARHGAP15Q53QZ3 475 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 BHLHA9Q7RTU4 235 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 SCD5Q86SK9 330 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 ARID3BQ8IVW6 561 aaPredicted RBP20.61■□□□□ 0.89
CLN3-225ENST00000566824 RIN3Q8TB24 985 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 SLC20A1Q8WUM9 679 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 DDX1Q92499 740 aaKnown RBP20.61■□□□□ 0.89
CLN3-225ENST00000566824 BAP1Q92560 729 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 SMARCD2Q92925 531 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 RNF38Q9H0F5 515 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 SCML2Q9UQR0 700 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 CCL26Q9Y258 94 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 USP3Q9Y6I4 520 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 MUC3AQ02505 3323 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 ABL1P00519 1130 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 USP17L7P0C7H9 530 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 SETSIPP0DME0 302 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 CYP11B1P15538 503 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 TKTL1P51854 596 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 STILQ15468 1287 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 TAF3Q5VWG9 929 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 CMTM8Q8IZV2 173 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 SLC44A3Q8N4M1 653 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 ARL14EPQ8N8R7 260 aaPredicted RBP20.6■□□□□ 0.89
CLN3-225ENST00000566824 SLITRK1Q96PX8 696 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 ULBP1Q9BZM6 244 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 TTYH3Q9C0H2 523 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 CCSER2Q9H7U1 834 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 TRPV4Q9HBA0 871 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 COMMD8Q9NX08 183 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 TJP2Q9UDY2 1190 aa20.6■□□□□ 0.89
CLN3-225ENST00000566824 A0A1W2PQH9 124 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 LCP1P13796 627 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 CHRNB2P17787 502 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 ZXDBP98169 803 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 ADIGQ0VDE8 80 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 VITQ6UXI7 678 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 EPS8L1Q8TE68 723 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 CLEC4CQ8WTT0 213 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 KCTD13Q8WZ19 329 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 USP13Q92995 863 aaPredicted RBP20.59■□□□□ 0.89
CLN3-225ENST00000566824 SPAG5Q96R06 1193 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 FBXO44Q9H4M3 255 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 EHD2Q9NZN4 543 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 NOCTQ9UK39 431 aaKnown RBP20.59■□□□□ 0.89
CLN3-225ENST00000566824 PCDHGC3Q9UN70 934 aa20.59■□□□□ 0.89
CLN3-225ENST00000566824 KIF26AQ9ULI4 1882 aaPredicted RBP20.59■□□□□ 0.89
CLN3-225ENST00000566824 MED7O43513 233 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 OAS1P00973 400 aaKnown RBP20.58■□□□□ 0.89
CLN3-225ENST00000566824 STAT1P42224 750 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 ARID5AQ03989 594 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 GRM2Q14416 872 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 E4F1Q66K89 784 aaPredicted RBP20.58■□□□□ 0.89
CLN3-225ENST00000566824 CCDC186Q7Z3E2 898 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 IGSF9Q9P2J2 1179 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 NUDT5Q9UKK9 219 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 COL4A3Q01955 1670 aa20.58■□□□□ 0.89
CLN3-225ENST00000566824 HEPACAM2A8MVW5 462 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 TNFRSF10AO00220 468 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 ECI2O75521 394 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 TBX18O95935 607 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 MMEP08473 750 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 SLC8A3P57103 927 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 SNX30Q5VWJ9 437 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 SMYD5Q6GMV2 418 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 PM20D1Q6GTS8 502 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 MTSS1LQ765P7 747 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 CACNA2D4Q7Z3S7 1137 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 C1orf131Q8NDD1 294 aaKnown RBP20.57■□□□□ 0.88
CLN3-225ENST00000566824 OVCA2Q8WZ82 227 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 ELSPBP1Q96BH3 223 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 LRRC4Q9HBW1 653 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 ZFP14Q9HCL3 533 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 DAAM1Q9Y4D1 1078 aa20.57■□□□□ 0.88
CLN3-225ENST00000566824 COCHO43405 550 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 ZBED1O96006 694 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 HDCP19113 662 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 DDX6P26196 483 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-225ENST00000566824 WEE1P30291 646 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 PPP3CCP48454 512 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 RPL34P49207 117 aaKnown RBP20.56■□□□□ 0.88
CLN3-225ENST00000566824 BPIFB4P59827 614 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 TDGQ13569 410 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 MEA1Q16626 185 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 IER5LQ5T953 404 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 HFE2Q6ZVN8 426 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 PDZD8Q8NEN9 1154 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 OLIG1Q8TAK6 271 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 SLC4A5Q9BY07 1137 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 SORCS3Q9UPU3 1222 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 TECTAO75443 2155 aa20.56■□□□□ 0.88
CLN3-225ENST00000566824 COL4A2P08572 1712 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 TICRRQ7Z2Z1 1910 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 TRAV19A0A0A6YYK7 116 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 LRRC53A6NM62 1247 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 YJEFN3A6XGL0 299 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 E7ENQ6 273 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 MDM4O15151 490 aa20.55■□□□□ 0.88
CLN3-225ENST00000566824 OLFM2O95897 454 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms