RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RMDN1Q96DB5 314 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 ZFRQ96KR1 1074 aaKnown RBP11.48□□□□□ -0.57
VPS39-208ENST00000564994 CSNK1G1Q9HCP0 422 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 KRT82Q9NSB4 513 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 FAM49BQ9NUQ9 324 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 GMIPQ9P107 970 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 ATP8B3O60423 1300 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 SPTBN2O15020 2390 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 COCHO43405 550 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 CYP17A1P05093 508 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 ZDHHC11BP0C7U3 371 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 MBL2P11226 248 aaPredicted RBP11.47□□□□□ -0.57
VPS39-208ENST00000564994 KRT13P13646 458 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 HOXA6P31267 233 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 OPRD1P41143 372 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 PRCPP42785 496 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 PMS1P54277 932 aaKnown RBP11.47□□□□□ -0.57
VPS39-208ENST00000564994 MAP3K7CLP57077 242 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 NUCB2P80303 420 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 SNX30Q5VWJ9 437 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 GPRIN1Q7Z2K8 1008 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 ADGRG2Q8IZP9 1017 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 PIAS4Q8N2W9 510 aaPredicted RBP11.47□□□□□ -0.57
VPS39-208ENST00000564994 PDZD8Q8NEN9 1154 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 SPATA20Q8TB22 786 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 OVCA2Q8WZ82 227 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 CD101Q93033 1021 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 NIF3L1Q9GZT8 377 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 CCSER2Q9H7U1 834 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 TMEM8AQ9HCN3 771 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 PARD6AQ9NPB6 346 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 CFAP97Q9P2B7 532 aa11.47□□□□□ -0.57
VPS39-208ENST00000564994 HHLA1C9JL84 531 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 CILPO75339 1184 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 NFATC1O95644 943 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 CD58P19256 250 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 ADORA2BP29275 332 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 GTF2H1P32780 548 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 PXNP49023 591 aaPredicted RBP11.46□□□□□ -0.57
VPS39-208ENST00000564994 MESP2Q0VG99 397 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 SIM2Q14190 667 aaPredicted RBP11.46□□□□□ -0.57
VPS39-208ENST00000564994 DHCR24Q15392 516 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 COBLL1Q53SF7 1204 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 HECTD3Q5T447 861 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 ZNF658Q5TYW1 1059 aaPredicted RBP11.46□□□□□ -0.57
VPS39-208ENST00000564994 KRT39Q6A163 491 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 ANKRD40Q6AI12 368 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 PRR23BQ6ZRT6 265 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 CLEC20AQ6ZU45 233 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 WDR5BQ86VZ2 330 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 ZC3H3Q8IXZ2 948 aaKnown RBP11.46□□□□□ -0.57
VPS39-208ENST00000564994 KIAA1958Q8N8K9 716 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 RPLP0P6Q8NHW5 317 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 WBP2Q969T9 261 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 CYFIP2Q96F07 1278 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 CCDC34Q96HJ3 373 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 GSDMAQ96QA5 445 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 HNRNPABQ99729 332 aaKnown RBP11.46□□□□□ -0.57
VPS39-208ENST00000564994 NT5C1AQ9BXI3 368 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 IMPG2Q9BZV3 1241 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 CYP3A43Q9HB55 503 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 RMND1Q9NWS8 449 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 COMMD8Q9NX08 183 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 PCDHA5Q9Y5H7 936 aa11.46□□□□□ -0.57
VPS39-208ENST00000564994 TRIM49BA6NDI0 452 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 GOLGA6L4A6NEF3 574 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 K7EQS6 105 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 CETN3O15182 167 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 ATG13O75143 517 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 FAM200BP0CF97 657 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 CNR2P34972 360 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 SLC6A11P48066 632 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 MXI1P50539 228 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 TUBP50607 506 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 NR1H3Q13133 447 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 FBXO43Q4G163 708 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 CBWD6Q4V339 395 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 CBWD3Q5JTY5 395 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 CBWD5Q5RIA9 395 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 LAIR1Q6GTX8 287 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 RHBDF2Q6PJF5 856 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 C12orf40Q86WS4 652 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 SFTPA1Q8IWL2 248 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 JAKMIP2Q96AA8 810 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 OSER1Q9NX31 292 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 RAB20Q9NX57 234 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 ABCA7Q8IZY2 2146 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 NCOR2Q9Y618 2525 aa11.45□□□□□ -0.58
VPS39-208ENST00000564994 E2F8A0AVK6 867 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 SLC9A3R1O14745 358 aaPredicted RBP11.44□□□□□ -0.58
VPS39-208ENST00000564994 TLR5O60602 858 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 TBX18O95935 607 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 EPB41P11171 864 aaKnown RBP11.44□□□□□ -0.58
VPS39-208ENST00000564994 CHRM1P11229 460 aaPredicted RBP11.44□□□□□ -0.58
VPS39-208ENST00000564994 CD44P16070 742 aaKnown RBP11.44□□□□□ -0.58
VPS39-208ENST00000564994 SPEM2Q0P670 501 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 ZNF394Q53GI3 561 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 PPP1R26Q5T8A7 1209 aaPredicted RBP11.44□□□□□ -0.58
VPS39-208ENST00000564994 ISM2Q6H9L7 571 aa11.44□□□□□ -0.58
VPS39-208ENST00000564994 SYT13Q7L8C5 426 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms