RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TSEN34Q9BSV6 310 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EDEM3Q9BZQ6 932 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SP110Q9HB58 689 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 TBK1Q9UHD2 729 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ATP8A1Q9Y2Q0 1164 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 LRRC37AA6NMS7 1700 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CITO14578 2027 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 A8MX80 341 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 H0Y626 953 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 GLUD1P00367 558 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 HDCP19113 662 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 GJA8P48165 433 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 RPL10AP62906 217 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 YWHAZP63104 245 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 DHX9Q08211 1270 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CDH18Q13634 790 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CLEC16AQ2KHT3 1053 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 PTPN20Q4JDL3 420 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 PDZD4Q76G19 769 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 DDX42Q86XP3 938 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 FAM126BQ8IXS8 530 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CFAP52Q8N1V2 620 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 KLHL23Q8NBE8 558 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 FBXO22Q8NEZ5 403 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 KRT35Q92764 455 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EMID1Q96A84 441 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 TRIM51Q9BSJ1 452 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EMILIN2Q9BXX0 1053 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SAGE1Q9NXZ1 904 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CLDND1Q9NY35 253 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 LSM7Q9UK45 103 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 DSEQ9UL01 958 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 NAALADL1Q9UQQ1 740 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 DAAM1Q9Y4D1 1078 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SNX10Q9Y5X0 201 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EVPLQ92817 2033 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 IGKV6-21A0A0C4DH24 114 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 RBM47A0AV96 593 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 GTPBP10A4D1E9 387 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 KCNK1O00180 336 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EEF2KO00418 725 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 PTGESO14684 152 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 KCNN4O15554 427 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ATP9BO43861 1147 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ADH1AP07327 375 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SESN2P58004 480 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 TWF1Q12792 350 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 GPM6BQ13491 265 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EFHC1Q5JVL4 640 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CNKSR3Q6P9H4 555 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ANKS3Q6ZW76 656 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 EFHBQ8N7U6 833 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 MGARPQ8TDB4 240 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SLC22A17Q8WUG5 538 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 POF1BQ8WVV4 589 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 USP6NLQ92738 828 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ATXN7L3BQ96GX2 97 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF333Q96JL9 665 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SMG9Q9H0W8 520 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SDCBP2Q9H190 292 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ST6GALNAC4Q9H4F1 302 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CBX4O00257 560 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 HSF2BPO75031 334 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RFPL2O75678 378 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 FGF18O76093 207 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 ACSL3O95573 720 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 ECEL1O95672 775 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 LTFP02788 710 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TMEM253P0C7T8 217 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 FLT3P36888 993 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RECQLP46063 649 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RAD23BP54727 409 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CYP4F8P98187 520 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 BIRC2Q13490 618 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 STILQ15468 1287 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RARS2Q5T160 578 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CDCA2Q69YH5 1023 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 IRF2BP2Q7Z5L9 587 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PRUNE1Q86TP1 453 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 OSTM1Q86WC4 334 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PALM2Q8IXS6 379 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 FAM71AQ8IYT1 594 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TTC9BQ8N6N2 239 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SPATA18Q8TC71 538 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SMG7Q92540 1137 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 FAF2Q96CS3 445 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RPGRIP1Q96KN7 1286 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 EPAS1Q99814 870 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 C17orf80Q9BSJ5 609 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 OSBPL8Q9BZF1 889 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 ERVK-5Q9HDB9 667 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 MARCH2Q9P0N8 246 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 INSL6Q9Y581 213 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 A0A1W2PQJ5 194 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 A0A1W2PRU2 124 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 MBLAC1A4D2B0 266 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 AGRPO00253 132 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SART1O43290 800 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TLR5O60602 858 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 C8AP07357 584 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms