RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 FGD2Q7Z6J4 655 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 GLMNQ92990 594 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 PRDM5Q9NQX1 630 aaPredicted RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 RNF181Q9P0P0 153 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 LAMC1P11047 1609 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 H0YC42 278 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 PROSCO94903 275 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 CTDNEP1O95476 244 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 EPB42P16452 691 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 C1DQ13901 141 aaKnown RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 POLD3Q15054 466 aaPredicted RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 GJB7Q6PEY0 223 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 CAMKK2Q96RR4 588 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 PARK7Q99497 189 aaKnown RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 OLFM1Q99784 485 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 SIKE1Q9BRV8 207 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 EPB41L4AQ9HCS5 686 aaPredicted RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ALDH1A2O94788 518 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 CYP11B1P15538 503 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 TALDO1P37837 337 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 SLC16A1P53985 500 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 OTUD4Q01804 1114 aaKnown RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 TROAPQ12815 778 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 SNAPC2Q13487 334 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 USP39Q53GS9 565 aaKnown RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 FAM45BPQ6NSW5 357 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 SLC22A9Q8IVM8 553 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 MYO1HQ8N1T3 1032 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 BLOC1S5Q8TDH9 187 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 RPRD1AQ96P16 312 aaPredicted RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 WDR41Q9HAD4 459 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 USP31Q70CQ4 1352 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 MAGEB16A2A368 324 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 NCAM2O15394 837 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZCCHC18P0CG32 403 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ODC1P11926 461 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 PRKAA2P54646 552 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 FAXCQ5TGI0 409 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZNF544Q6NX49 715 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 OTOAQ7RTW8 1153 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ST13P5Q8NFI4 369 aaPredicted RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 CHST12Q9NRB3 414 aa13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZNF70Q9UC06 446 aaPredicted RBP13.63□□□□□ -0.23
CSPG4P11-201ENST00000560634 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 NPM3O75607 178 aaKnown RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 PLEKP08567 350 aaPredicted RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 OASLQ15646 514 aaKnown RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 DGKDQ16760 1214 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 SDE2Q6IQ49 451 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 ERAP2Q6P179 960 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 FBXO33Q7Z6M2 555 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 TMPRSS6Q8IU80 811 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 RAET1EQ8TD07 263 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 DPP3Q9NY33 737 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 CAPN6Q9Y6Q1 641 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 FBXO21O94952 628 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 MGAT5Q09328 741 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 TMEM132BQ14DG7 1078 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 PTPAQ15257 358 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 TAF1CQ15572 869 aaPredicted RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 FUT11Q495W5 492 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 CASP10Q92851 521 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 ELP3Q9H9T3 547 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 COPG2Q9UBF2 871 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 POLG2Q9UHN1 485 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 PNMA8BQ9ULN7 279 aaPredicted RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 NRKQ7Z2Y5 1582 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 GPR75-ASB3A0A0A6YYF3 556 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 TK2O00142 265 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 ATP5BP06576 529 aaKnown RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 GPC1P35052 558 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 NUP62P37198 522 aaPredicted RBP13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 MLH1P40692 756 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 MPP3Q13368 585 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 CDH18Q13634 790 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 TTI2Q6NXR4 508 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 LRRC71Q8N4P6 559 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 KYQ8NBH2 561 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 MAGED4Q96JG8 741 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 KLHL25Q9H0H3 589 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 KBTBD4Q9NVX7 518 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 RHBDL2Q9NX52 303 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 SHOC2Q9UQ13 582 aa13.62□□□□□ -0.23
CSPG4P11-201ENST00000560634 MSH4O15457 936 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 SGPL1O95470 568 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 ITGALP20701 1170 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 OR1G1P47890 313 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 PPP4CP60510 307 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 CDC16Q13042 620 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 GRB10Q13322 594 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 GJC2Q5T442 439 aaPredicted RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 DENND5BQ6ZUT9 1274 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 SLFN11Q7Z7L1 901 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 MTDHQ86UE4 582 aaKnown RBP13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 ATG4AQ8WYN0 398 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 PDZK1P1A8MUH7 402 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 CRTAMO95727 393 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 TPBGLP0DKB5 382 aa13.61□□□□□ -0.23
CSPG4P11-201ENST00000560634 NAMPTP43490 491 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms