RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TANKQ92844 425 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TP53INP1Q96A56 240 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF512Q96ME7 567 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 DOK1Q99704 481 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 INO80BQ9C086 356 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 COL18A1P39060 1754 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TMX2-CTNND1H3BSU7 103 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 ACOX3O15254 700 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TP73O15350 636 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TYROBPO43914 113 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 CSF1RP07333 972 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 KRT5P13647 590 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 PRKCQQ04759 706 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 KDSRQ06136 332 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 BNIP3Q12983 259 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 CCDC28AQ8IWP9 274 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 PQLC1Q8N2U9 271 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 LILRB2Q8N423 598 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 NEDD1Q8NHV4 660 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF420Q8TAQ5 688 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 ANKRD49Q8WVL7 239 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 KBTBD7Q8WVZ9 684 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 LRGUKQ96M69 825 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 YME1L1Q96TA2 773 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 C8orf4Q9NR00 106 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 GDAP2Q9NXN4 497 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 NENFQ9UMX5 172 aa14.34□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF335Q9H4Z2 1342 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-226ENST00000556825 TRIM64BA6NI03 449 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TAF4O00268 1085 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 GGPS1O95749 300 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 COL6A1P12109 1028 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ITIH2P19823 946 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 CD247P20963 164 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 CPOXP36551 454 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 COILP38432 576 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 RTN1Q16799 776 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 PPP6R3Q5H9R7 873 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 RARS2Q5T160 578 aaKnown RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF618Q5T7W0 954 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ATAD3BQ5T9A4 648 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 LYSMD3Q7Z3D4 306 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TBC1D10CQ8IV04 446 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 SHKBP1Q8TBC3 707 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ZUFSPQ96AP4 578 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 METTL2AQ96IZ6 378 aaKnown RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 SMARCAD1Q9H4L7 1026 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 RMND5AQ9H871 391 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 SLAIN2Q9P270 581 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 BCAP29Q9UHQ4 241 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 DNAJC12Q9UKB3 198 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 SOX13Q9UN79 622 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 PSMD13Q9UNM6 376 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TACC3Q9Y6A5 838 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 LTBP4Q8N2S1 1624 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 H3BNH8 94 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 GIPC1O14908 333 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 AREL1O15033 823 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 SNAP91O60641 907 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 GSTM1P09488 218 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 PSMC3P17980 439 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TBXAS1P24557 533 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 GABRB3P28472 473 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 PKLRP30613 574 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 POLR2BP30876 1174 aaKnown RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 GNL1P36915 607 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 RFX5P48382 616 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TBCCQ15814 346 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 IRF2BP2Q7Z5L9 587 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ADAMTSL2Q86TH1 951 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 KBTBD6Q86V97 674 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 DNAAF5Q86Y56 855 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TICAM1Q8IUC6 712 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ZNF276Q8N554 614 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 DTX3Q8N9I9 347 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 ADCY4Q8NFM4 1077 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 HM13Q8TCT9 377 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TTC9Q92623 222 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 NLRP4Q96MN2 994 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 SLC29A1Q99808 456 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 TSSK1BQ9BXA7 367 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 MANSC1Q9H8J5 431 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 UBA2Q9UBT2 640 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-226ENST00000556825 DNM3Q9UQ16 869 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 AP4S1Q9Y587 144 aa14.33□□□□□ -0.12
SHMT2-226ENST00000556825 A0A1W2PPW3 197 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 PRAMEF22A3QJZ6 481 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 DCAF8L1A6NGE4 600 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 B4E1Z4 1266 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 H3BMQ9 156 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 JRKO75564 520 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 MYL2P10916 166 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 CHRNB2P17787 502 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 SLC26A2P50443 739 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 MCCD1P59942 119 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-226ENST00000556825 CDKL1Q00532 357 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 PTPN12Q05209 780 aaKnown RBP14.32□□□□□ -0.12
SHMT2-226ENST00000556825 CYP1B1Q16678 543 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 PROSER3Q2NL68 480 aa14.32□□□□□ -0.12
SHMT2-226ENST00000556825 CAVIN4Q5BKX8 364 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms