RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 RBAKQ9NYW8 714 aaPredicted RBP13.69□□□□□ -0.22
USP28-212ENST00000544750 CFAP97Q9P2B7 532 aa13.69□□□□□ -0.22
USP28-212ENST00000544750 CIZ1Q9ULV3 898 aaPredicted RBP13.69□□□□□ -0.22
USP28-212ENST00000544750 SMC3Q9UQE7 1217 aa13.69□□□□□ -0.22
USP28-212ENST00000544750 KIF3AQ9Y496 699 aa13.69□□□□□ -0.22
USP28-212ENST00000544750 URB1O60287 2271 aaKnown RBP13.69□□□□□ -0.22
USP28-212ENST00000544750 PTPRJQ12913 1337 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 IGHV1OR15-9A0A0B4J2B8 117 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 F8VP50 259 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 ADH1CP00326 375 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 KRT19P08727 400 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 ADH5P11766 374 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 WARSP23381 471 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 CACNA2D1P54289 1103 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 RPL6Q02878 288 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 SCAPQ12770 1279 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 TAF10Q12962 218 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 MAPRE1Q15691 268 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 LY6G5CQ5SRR4 150 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 DYMQ7RTS9 669 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 RABEPKQ7Z6M1 372 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 DEFB119Q8N690 84 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 KRI1Q8N9T8 703 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 MYCBPAPQ8TBZ2 947 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 ADAMTS14Q8WXS8 1223 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 C8orf48Q96LL4 319 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 DUSP9Q99956 384 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 CBWD1Q9BRT8 395 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 GTPBP2Q9BX10 602 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 INTS13Q9NVM9 706 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 SEL1LQ9UBV2 794 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 GOLGA4Q13439 2230 aaKnown RBP13.68□□□□□ -0.22
USP28-212ENST00000544750 CABIN1Q9Y6J0 2220 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 KNL1Q8NG31 2342 aa13.68□□□□□ -0.22
USP28-212ENST00000544750 A0A1W2PQD8 194 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 A0A1W2PQF6 199 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 E2F8A0AVK6 867 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 GOLGA8IPA6NC78 632 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 GOLGA8JA6NMD2 632 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 TRIM66O15016 1216 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 RDXP35241 583 aaKnown RBP13.67□□□□□ -0.22
USP28-212ENST00000544750 CASP5P51878 434 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 ATXN3P54252 364 aaPredicted RBP13.67□□□□□ -0.22
USP28-212ENST00000544750 SLC14A1Q13336 389 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 SLC36A4Q6YBV0 504 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 USP49Q70CQ1 688 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 DDX42Q86XP3 938 aaKnown RBP eCLIP13.67□□□□□ -0.22
USP28-212ENST00000544750 MIB1Q86YT6 1006 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 PGBD3Q8N328 593 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 ZNF513Q8N8E2 541 aaPredicted RBP13.67□□□□□ -0.22
USP28-212ENST00000544750 OR5B17Q8NGF7 314 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 OTUB2Q96DC9 234 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 CAMK1GQ96NX5 476 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 ACCSQ96QU6 501 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 FGFBP2Q9BYJ0 223 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 MRPL44Q9H9J2 332 aaKnown RBP13.67□□□□□ -0.22
USP28-212ENST00000544750 EHD2Q9NZN4 543 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 CALCOCO1Q9P1Z2 691 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 TBC1D14Q9P2M4 693 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 EXOC7Q9UPT5 735 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 STARD13Q9Y3M8 1113 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 BPTFQ12830 3046 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 ASXL3Q9C0F0 2248 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 SHROOM3Q8TF72 1996 aa13.67□□□□□ -0.22
USP28-212ENST00000544750 SETXQ7Z333 2677 aaKnown RBP13.67□□□□□ -0.22
USP28-212ENST00000544750 TMEM131Q92545 1883 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 K7ELQ4 463 aaPredicted RBP13.66□□□□□ -0.22
USP28-212ENST00000544750 HOXC11O43248 304 aaPredicted RBP13.66□□□□□ -0.22
USP28-212ENST00000544750 SH3BP5O60239 455 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 TULP3O75386 442 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 PDGFRBP09619 1106 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 TMEM191BP0C7N4 346 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 ANXA13P27216 316 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 CYP27A1Q02318 531 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 GAD2Q05329 585 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 MYO1EQ12965 1108 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 TRIP6Q15654 476 aaKnown RBP13.66□□□□□ -0.22
USP28-212ENST00000544750 C19orf48Q6RUI8 117 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 CCNI2Q6ZMN8 369 aaPredicted RBP13.66□□□□□ -0.22
USP28-212ENST00000544750 TRMT11Q7Z4G4 463 aaKnown RBP13.66□□□□□ -0.22
USP28-212ENST00000544750 PDZD3Q86UT5 571 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 TERB1Q8NA31 727 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 SNX21Q969T3 373 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 ZNF419Q96HQ0 510 aaPredicted RBP13.66□□□□□ -0.22
USP28-212ENST00000544750 HPDLQ96IR7 371 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 OLFML3Q9NRN5 406 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 TBC1D7Q9P0N9 293 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 CKAP5Q14008 2032 aa13.66□□□□□ -0.22
USP28-212ENST00000544750 FRMD3A2A2Y4 597 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 TBC1D3BA6NDS4 549 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 TRIM24O15164 1050 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 COCHO43405 550 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 SYPP08247 313 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 FTH1P19P0C7X4 201 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 MBL2P11226 248 aaPredicted RBP13.65□□□□□ -0.22
USP28-212ENST00000544750 HOXB2P14652 356 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 GAP43P17677 238 aa13.65□□□□□ -0.22
USP28-212ENST00000544750 NTSR1P30989 418 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms