RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 FAM171BQ6P995 826 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 BHLHA9Q7RTU4 235 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ANKRD33Q7Z3H0 272 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 POLNQ7Z5Q5 900 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 DEFB128Q7Z7B8 93 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 CCDC105Q8IYK2 499 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 CAVIN3Q969G5 261 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ZNF333Q96JL9 665 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 HSFY1Q96LI6 401 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 UROC1Q96N76 676 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ERP44Q9BS26 406 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 FTHL17Q9BXU8 183 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 HIPK3Q9H422 1215 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 NRDE2Q9H7Z3 1164 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 C10orf88Q9H8K7 445 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 NGRNQ9NPE2 291 aaKnown RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ASNSD1Q9NWL6 643 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 OGFRQ9NZT2 677 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 SAE1Q9UBE0 346 aaPredicted RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 LCMT1Q9UIC8 334 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 NEU2Q9Y3R4 380 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 MKI67P46013 3256 aaKnown RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 COL4A6Q14031 1691 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 TP73O15350 636 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 PTPN7P35236 360 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 PCK1P35558 622 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 PBX3P40426 434 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 DYNLT1P63172 113 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 HLTFQ14527 1009 aaKnown RBP eCLIP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 TRIP13Q15645 432 aaPredicted RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 MAP9Q49MG5 647 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 GLIS1Q8NBF1 620 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 CMASQ8NFW8 434 aaPredicted RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 SEPT8Q92599 483 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 B3GALT6Q96L58 329 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 PLVAPQ9BX97 442 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ULBP1Q9BZM6 244 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ZDHHC18Q9NUE0 388 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 DDX56Q9NY93 547 aaKnown RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 FNDC1Q4ZHG4 1894 aaPredicted RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 AGPSO00116 658 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 RNF8O76064 485 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 CXCL10P02778 98 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 FYNP06241 537 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 COL6A1P12109 1028 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 BDNFP23560 247 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 SDC4P31431 198 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 ACADSBP45954 432 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 MRPS5P82675 430 aaKnown RBP12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 PPP2R5EQ16537 467 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 HADHQ16836 314 aaKnown RBP12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 UBAP2Q5T6F2 1119 aaKnown RBP12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 SYPL2Q5VXT5 272 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 OVOS1Q6IE37 1185 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 SCYL2Q6P3W7 929 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 EMBQ6PCB8 327 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 DEFB106AQ8N104 65 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 URGCPQ8TCY9 931 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 PIK3R5Q8WYR1 880 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 KCTD13Q8WZ19 329 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 TBCBQ99426 244 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 ACBD6Q9BR61 282 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 CYLDQ9NQC7 956 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 TMPRSS4Q9NRS4 437 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 MARCH5Q9NX47 278 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 DNPEPQ9ULA0 475 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 PCDHB8Q9UN66 801 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 MICAL3Q7RTP6 2002 aa12.84□□□□□ -0.35
AP003559.1-201ENST00000540906 LIASO43766 372 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 RRP9O43818 475 aaKnown RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 ENDOD1O94919 500 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 KRT7P08729 469 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 IL4RP24394 825 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 PCSK1P29120 753 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 TKTL1P51854 596 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 KRT17Q04695 432 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 RNASELQ05823 741 aaKnown RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 CUL1Q13616 776 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 ACAP1Q15027 740 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 TFDP3Q5H9I0 405 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 RAB41Q5JT25 222 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 NPNTQ6UXI9 565 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 B4GALNT4Q76KP1 1039 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 TMEM173Q86WV6 379 aaPredicted RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 ZDHHC17Q8IUH5 632 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 CCDC185Q8N715 623 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 STKLD1Q8NE28 680 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 BCL7CQ8WUZ0 217 aaPredicted RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 RIN2Q8WYP3 895 aaPredicted RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 CENPIQ92674 756 aaPredicted RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 DDX23Q9BUQ8 820 aaKnown RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 SNRNP25Q9BV90 132 aaKnown RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 SEZ6LQ9BYH1 1024 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 ELAC1Q9H777 363 aaKnown RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 TBX21Q9UL17 535 aa12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 UTP11Q9Y3A2 253 aaKnown RBP12.83□□□□□ -0.35
AP003559.1-201ENST00000540906 PATJQ8NI35 1801 aa12.83□□□□□ -0.36
AP003559.1-201ENST00000540906 ZNF638Q14966 1978 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms