RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZNF157P51786 506 aaPredicted RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 BST2Q10589 180 aaKnown RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 MMRN1Q13201 1228 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 SLC26A9Q7LBE3 791 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 CHMP6Q96FZ7 201 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 RNF157Q96PX1 679 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 LPIN3Q9BQK8 851 aa14.4□□□□□ -0.1
RTN3-210ENST00000540798 ZMYND8Q9ULU4 1186 aaPredicted RBP14.4□□□□□ -0.1
RTN3-210ENST00000540798 PRPSAP2O60256 369 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 GNAT1P11488 350 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CTCFP49711 727 aaPredicted RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 TAF6P49848 677 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 BCAT1P54687 386 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CDH6P55285 790 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 EIF3EP60228 445 aaKnown RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 FASTKD3Q14CZ7 662 aaKnown RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 RASA2Q15283 850 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 SCUBE3Q8IX30 993 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CYP4X1Q8N118 509 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 MAML1Q92585 1016 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 DDX20Q9UHI6 824 aaKnown RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 GTF2IRD1Q9UHL9 959 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 GRAP2O75791 330 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 FAM163BP0C2L3 166 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 WARSP23381 471 aaKnown RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 TFDP2Q14188 446 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 SV2CQ496J9 727 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CCDC38Q502W7 563 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 SLC9A4Q6AI14 798 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 FAM228AQ86W67 206 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 FAM172AQ8WUF8 416 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 RTP4Q96DX8 246 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CCDC77Q9BR77 488 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 APOL6Q9BWW8 343 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CALN1Q9BXU9 219 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 C10orf88Q9H8K7 445 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 RNF19AQ9NV58 838 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 INTS9Q9NV88 658 aaKnown RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 KLK14Q9P0G3 267 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 NAALADL1Q9UQQ1 740 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 MCF2LO15068 1137 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 LMO2P25791 158 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 GNL1P36915 607 aaPredicted RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 HDAC4P56524 1084 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 ZNF618Q5T7W0 954 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 ANKRD22Q5VYY1 191 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 CENPUQ71F23 418 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 PACS2Q86VP3 889 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 TOP6BLQ8N6T0 577 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 PQLC3Q8N755 202 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 TRPV1Q8NER1 839 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 RSAD2Q8WXG1 361 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 PPP1R10Q96QC0 940 aaKnown RBP14.39□□□□□ -0.11
RTN3-210ENST00000540798 PCDH18Q9HCL0 1135 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 TSC2P49815 1807 aa14.39□□□□□ -0.11
RTN3-210ENST00000540798 PTGESO14684 152 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 DUSP11O75319 330 aaKnown RBP14.38□□□□□ -0.11
RTN3-210ENST00000540798 IFNB1P01574 187 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 CCDC130P13994 396 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 AKR1A1P14550 325 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 CTGFP29279 349 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 SDC4P31431 198 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 STIP1P31948 543 aaKnown RBP14.38□□□□□ -0.11
RTN3-210ENST00000540798 NKX3-2P78367 333 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 PPARDQ03181 441 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 TAF2Q6P1X5 1199 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 MICALCLQ6ZW33 695 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 SPATA18Q8TC71 538 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 B3GNT5Q9BYG0 378 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 PPCSQ9HAB8 311 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 KPNA6O60684 536 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 SLC10A3P09131 477 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 RBP3P10745 1247 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 CREB1P16220 341 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 TGM2P21980 687 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 INHBEP58166 350 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 NPNTQ6UXI9 565 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 MAP7D3Q8IWC1 876 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 PLD5Q8N7P1 536 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 C7orf31Q8N865 590 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 APPL2Q8NEU8 664 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 HSFY1Q96LI6 401 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 WDR83Q9BRX9 315 aaKnown RBP14.38□□□□□ -0.11
RTN3-210ENST00000540798 ZNF670Q9BS34 389 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 ADAM33Q9BZ11 813 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 FETUBQ9UGM5 382 aa14.38□□□□□ -0.11
RTN3-210ENST00000540798 MYADML2A6NDP7 307 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 GJA9P57773 515 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 LILRA4P59901 499 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 HIF1AQ16665 826 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 CDO1Q16878 200 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ANKRD20A8PQ5CZ79 823 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 CYP4F22Q6NT55 531 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 CHADLQ6NUI6 762 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 TADA2BQ86TJ2 420 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 SAPCD2Q86UD0 394 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 SEC16BQ96JE7 1060 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 SNRNP25Q9BV90 132 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 USP29Q9HBJ7 922 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 GOLGA2P5Q9HBQ8 144 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms