RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TULP2O00295 520 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 GJB6O95452 261 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 PSMA2P25787 234 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 C4orf50Q6ZRC1 276 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 CLEC20AQ6ZU45 233 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 PIGZQ86VD9 579 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 RNF168Q8IYW5 571 aaPredicted RBP22.24■■□□□ 1.15
VPS28-212ENST00000530836 VPS52Q8N1B4 723 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 MMGT1Q8N4V1 131 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 PKMYT1Q99640 499 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 GPR62Q9BZJ7 368 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 TLR9Q9NR96 1032 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 KRT82Q9NSB4 513 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 ASNSD1Q9NWL6 643 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 TMEM59LQ9UK28 342 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 NLRC5Q86WI3 1866 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 AP1G2O75843 785 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 TUBBP07437 444 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 IGFBP4P22692 258 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 ZNF143P52747 638 aaPredicted RBP22.24■■□□□ 1.15
VPS28-212ENST00000530836 ERVFC1P60507 584 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 DCAF12L1Q5VU92 463 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 FUT10Q6P4F1 479 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 SLC26A9Q7LBE3 791 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 DCP1BQ8IZD4 617 aaKnown RBP22.24■■□□□ 1.15
VPS28-212ENST00000530836 CSNK1G1Q9HCP0 422 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 MTCH2Q9Y6C9 303 aa22.24■■□□□ 1.15
VPS28-212ENST00000530836 CCDC188H7C350 402 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 CLDN5O00501 218 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 PAPSS1O43252 624 aaPredicted RBP22.23■■□□□ 1.15
VPS28-212ENST00000530836 RNF8O76064 485 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 FBXO21O94952 628 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 SOD2P04179 222 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 GPD1P21695 349 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 ZNF252P-AS1Q0IIN9 211 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 PPP2R5EQ16537 467 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 EFHC1Q5JVL4 640 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 CC2D1AQ6P1N0 951 aaPredicted RBP22.23■■□□□ 1.15
VPS28-212ENST00000530836 TAS1R1Q7RTX1 841 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 POLNQ7Z5Q5 900 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 SCUBE3Q8IX30 993 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 KATNAL2Q8IYT4 538 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 JOSD2Q8TAC2 188 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 MYLPFQ96A32 169 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 CNPY3Q9BT09 278 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 LRRC4Q9HBW1 653 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 PNPLA8Q9NP80 782 aa22.23■■□□□ 1.15
VPS28-212ENST00000530836 C2CD4BA6NLJ0 364 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 DPYSL4O14531 572 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 FSCN2O14926 492 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 SART1O43290 800 aaKnown RBP22.22■■□□□ 1.15
VPS28-212ENST00000530836 CETN2P41208 172 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 OGDHQ02218 1023 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 ELF2Q15723 593 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 HADHQ16836 314 aaKnown RBP22.22■■□□□ 1.15
VPS28-212ENST00000530836 PDE12Q6L8Q7 609 aaKnown RBP22.22■■□□□ 1.15
VPS28-212ENST00000530836 TMC7Q7Z402 723 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 OR10T2Q8NGX3 314 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 ZBP1Q9H171 429 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 NGRNQ9NPE2 291 aaKnown RBP22.22■■□□□ 1.15
VPS28-212ENST00000530836 DDX56Q9NY93 547 aaKnown RBP22.22■■□□□ 1.15
VPS28-212ENST00000530836 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.22■■□□□ 1.15
VPS28-212ENST00000530836 USTQ9Y2C2 406 aa22.22■■□□□ 1.15
VPS28-212ENST00000530836 V9GYY5 206 aaPredicted RBP22.22■■□□□ 1.15
VPS28-212ENST00000530836 OR6C75A6NL08 312 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 F8VP50 259 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 FGGP02679 453 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 GLI1P08151 1106 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 CTSAP10619 480 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 FGFR3P22607 806 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 IRS1P35568 1242 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 SSR1P43307 286 aaKnown RBP22.21■■□□□ 1.15
VPS28-212ENST00000530836 MAP3K7CLP57077 242 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 MRPL58Q14197 206 aaKnown RBP22.21■■□□□ 1.15
VPS28-212ENST00000530836 NFE2Q16621 373 aaPredicted RBP22.21■■□□□ 1.15
VPS28-212ENST00000530836 GLE1Q53GS7 698 aaKnown RBP22.21■■□□□ 1.15
VPS28-212ENST00000530836 ZNF280DQ6N043 979 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 SIX6OS1Q8N1H7 587 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 MICAL1Q8TDZ2 1067 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 TCF25Q9BQ70 676 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 HERC2P3Q9BVR0 1158 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 ZCWPW1Q9H0M4 648 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 CHST7Q9NS84 486 aa22.21■■□□□ 1.15
VPS28-212ENST00000530836 GOLGA6L10A0A0M3HER8 536 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 H7C4K7 107 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 GABBR2O75899 941 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 KRT7P08729 469 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 PYGMP11217 842 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 LCP1P13796 627 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 FOSL2P15408 326 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 PDGFRAP16234 1089 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 PCK1P35558 622 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 MARCKSL1P49006 195 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 SMARCB1Q12824 385 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 LONRF2Q1L5Z9 754 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 USP41Q3LFD5 358 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 VARS2Q5ST30 1063 aaKnown RBP22.2■■□□□ 1.15
VPS28-212ENST00000530836 FAM171A1Q5VUB5 890 aa22.2■■□□□ 1.15
VPS28-212ENST00000530836 SPATA2LQ8IUW3 424 aaPredicted RBP22.2■■□□□ 1.15
VPS28-212ENST00000530836 NOA1Q8NC60 698 aaKnown RBP22.2■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms