RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CLEC20AQ6ZU45 233 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 SLC35B2Q8TB61 432 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 CENPIQ92674 756 aaPredicted RBP21.67■■□□□ 1.06
VPS28-209ENST00000528142 SNF8Q96H20 258 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 MTRF1LQ9UGC7 380 aaKnown RBP21.67■■□□□ 1.06
VPS28-209ENST00000528142 CDH9Q9ULB4 789 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 INPP5FQ9Y2H2 1132 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 ATP8A1Q9Y2Q0 1164 aa21.67■■□□□ 1.06
VPS28-209ENST00000528142 MYBPHLA2RUH7 354 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 GOLGA8KD6RF30 607 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 CST8O60676 142 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 KRT14P02533 472 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 CDK7P50613 346 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 VCPP55072 806 aaKnown RBP21.66■■□□□ 1.06
VPS28-209ENST00000528142 HDAC4P56524 1084 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 SLC8A3P57103 927 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 ADCY1Q08828 1119 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 CALCOCO2Q13137 446 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 BOLA3Q53S33 107 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 SLC24A5Q71RS6 500 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 SPATA18Q8TC71 538 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 UBLCP1Q8WVY7 318 aaPredicted RBP21.66■■□□□ 1.06
VPS28-209ENST00000528142 UROC1Q96N76 676 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 NCAPGQ9BPX3 1015 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 RTP3Q9BQQ7 232 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 DDX23Q9BUQ8 820 aaKnown RBP21.66■■□□□ 1.06
VPS28-209ENST00000528142 NGRNQ9NPE2 291 aaKnown RBP21.66■■□□□ 1.06
VPS28-209ENST00000528142 ADAM21Q9UKJ8 722 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 EOMESO95936 686 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 CYP11A1P05108 521 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 CCL5P13501 91 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 TFE3P19532 575 aaPredicted RBP21.66■■□□□ 1.06
VPS28-209ENST00000528142 PAX3P23760 479 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 ZNF365Q70YC5 407 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 ALLCQ8N6M5 410 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 CCDC89Q8N998 374 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 TEKT4Q8WW24 435 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 ARL8AQ96BM9 186 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 HAUS1Q96CS2 278 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 DEFB118Q96PH6 123 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 ADAM33Q9BZ11 813 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 FRMD8P1Q9BZ68 369 aaPredicted RBP21.66■■□□□ 1.06
VPS28-209ENST00000528142 EPB41L4BQ9H329 900 aa21.66■■□□□ 1.06
VPS28-209ENST00000528142 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.66■■□□□ 1.06
VPS28-209ENST00000528142 KBTBD13C9JR72 458 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 I3L4J1 428 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 M0QZQ0 153 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 FAM200BP0CF97 657 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 ODC1P11926 461 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 ATF2P15336 505 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 BRCC3P46736 316 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 PMS2P54278 862 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 TTMPQ5BVD1 217 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 EFHC1Q5JVL4 640 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 GOLGA6L1Q8N7Z2 621 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 TTC13Q8NBP0 860 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 PCED1BQ96HM7 432 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 TBCBQ99426 244 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 MED10Q9BTT4 135 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 ZNF148Q9UQR1 794 aa21.65■■□□□ 1.06
VPS28-209ENST00000528142 ITGAVP06756 1048 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 PCSK1P29120 753 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 ADCY8P40145 1251 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 CDH6P55285 790 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 DYNLT1P63172 113 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 ADIGQ0VDE8 80 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 DPYSL3Q14195 570 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 PAN2Q504Q3 1202 aaKnown RBP21.64■■□□□ 1.06
VPS28-209ENST00000528142 FAM35AQ86V20 835 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 MYCBPAPQ8TBZ2 947 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 ACTL9Q8TC94 416 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 KRT82Q9NSB4 513 aa21.64■■□□□ 1.06
VPS28-209ENST00000528142 SAE1Q9UBE0 346 aaPredicted RBP21.64■■□□□ 1.06
VPS28-209ENST00000528142 DESP17661 470 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 LBX1P52954 281 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 ITGA8P53708 1063 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 MRPS5P82675 430 aaKnown RBP21.64■■□□□ 1.05
VPS28-209ENST00000528142 OTUD4Q01804 1114 aaKnown RBP21.64■■□□□ 1.05
VPS28-209ENST00000528142 MMRN1Q13201 1228 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 PDK2Q15119 407 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 SCYL2Q6P3W7 929 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 DCLRE1AQ6PJP8 1040 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 GSTA5Q7RTV2 222 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 PRUNE1Q86TP1 453 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 RFX6Q8HWS3 928 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 GLIS1Q8NBF1 620 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 SMOQ99835 787 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 CALN1Q9BXU9 219 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 SEZ6LQ9BYH1 1024 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 PABPC3Q9H361 631 aaKnown RBP21.64■■□□□ 1.05
VPS28-209ENST00000528142 FAM204AQ9H8W3 233 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 AAASQ9NRG9 546 aa21.64■■□□□ 1.05
VPS28-209ENST00000528142 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.64■■□□□ 1.05
VPS28-209ENST00000528142 MDM4O15151 490 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 SELPP16109 830 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 IL4RP24394 825 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 MAP3K7CLP57077 242 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 CAV1Q03135 178 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 ZNF844Q08AG5 666 aa21.63■■□□□ 1.05
VPS28-209ENST00000528142 CLLU1OSQ5K130 101 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms