RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 SLC14A1Q13336 389 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 TRIP6Q15654 476 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 BMT2Q1RMZ1 405 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 FOXD4L6Q3SYB3 417 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 EOGTQ5NDL2 527 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 PEAR1Q5VY43 1037 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 FOXD4L3Q6VB84 417 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 LIMS2Q7Z4I7 341 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 WDR49Q8IV35 697 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 CEP57L1Q8IYX8 460 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 PGBD3Q8N328 593 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 PDCL2Q8N4E4 241 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 TOP6BLQ8N6T0 577 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 FSIP1Q8NA03 581 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 SCFD1Q8WVM8 642 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 TRMT2BQ96GJ1 504 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 ABCB6Q9NP58 842 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 SCUBE2Q9NQ36 999 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 AGPAT3Q9NRZ7 376 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 SIX4Q9UIU6 781 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 R3HCC1Q9Y3T6 440 aaKnown RBP11.24□□□□□ -0.61
CPSF1-203ENST00000527916 PTPRDP23468 1912 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 NAV2Q8IVL1 2488 aa11.24□□□□□ -0.61
CPSF1-203ENST00000527916 TNNC2P02585 160 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 KRT19P08727 400 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 OPRD1P41143 372 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 FAM193AP78312 1265 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 KRT85P78386 507 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 MYL7Q01449 175 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 MYO1EQ12965 1108 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 KCNB1Q14721 858 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 KNOP1Q1ED39 458 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 SOWAHAQ2M3V2 549 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 TMEM92Q6UXU6 159 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 SLC36A4Q6YBV0 504 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 CCNI2Q6ZMN8 369 aaPredicted RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 HS2ST1Q7LGA3 356 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 CBWD2Q8IUF1 395 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 MINDY1Q8N5J2 469 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 ALLCQ8N6M5 410 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 XXYLT1Q8NBI6 393 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 TXNDC5Q8NBS9 432 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 SPRYD3Q8NCJ5 442 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 SH3RF2Q8TEC5 729 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 HNRNPLLQ8WVV9 542 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 HMGB4Q8WW32 186 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 ADAMTS14Q8WXS8 1223 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 LRIG1Q96JA1 1093 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 MYRFLQ96LU7 910 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 CYP2S1Q96SQ9 504 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 PKMYT1Q99640 499 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 MTMR12Q9C0I1 747 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 CAPN10Q9HC96 672 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 DNAAF2Q9NVR5 837 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 DDX43Q9NXZ2 648 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 L1RE1Q9UN81 338 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 APOBEC2Q9Y235 224 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 HPSEQ9Y251 543 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 ATXN2Q99700 1313 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 TNRC6BQ9UPQ9 1833 aaKnown RBP11.23□□□□□ -0.61
CPSF1-203ENST00000527916 OBSL1O75147 1896 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 ADAMTS9Q9P2N4 1935 aa11.23□□□□□ -0.61
CPSF1-203ENST00000527916 FAM237AA0A1B0GTK4 181 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 ARHGAP33O14559 1287 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 ACTN4O43707 911 aaKnown RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 KLRC4O43908 158 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 NOL4O94818 638 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 ZIC2O95409 532 aaPredicted RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 KLF8O95600 359 aaPredicted RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 CD59P13987 128 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 TCF3P15923 654 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 HDCP19113 662 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 PCSK1P29120 753 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 AFMP43652 599 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 RPL6Q02878 288 aaKnown RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 PTPRJQ12913 1337 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 CUL4BQ13620 913 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 PSMD6Q15008 389 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 SNRNP35Q16560 246 aaKnown RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 MAP7D1Q3KQU3 841 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 CFAP221Q4G0U5 840 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 INTS6LQ5JSJ4 861 aaKnown RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 SCARA3Q6AZY7 606 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 FAM171BQ6P995 826 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 ARL14EPQ8N8R7 260 aaPredicted RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 OR5B17Q8NGF7 314 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 GOLGA5Q8TBA6 731 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 NOC3LQ8WTT2 800 aaKnown RBP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 PAGE5Q96GU1 130 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 FUBP3Q96I24 572 aaKnown RBP eCLIP11.22□□□□□ -0.61
CPSF1-203ENST00000527916 HPDLQ96IR7 371 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 SLC22A12Q96S37 553 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 PI4K2AQ9BTU6 479 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 BLZF1Q9H2G9 400 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 LINC00597Q9H2U6 94 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 SLC39A2Q9NP94 309 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 TMLHEQ9NVH6 421 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 SERTAD1Q9UHV2 236 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 ARHGAP26Q9UNA1 814 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 RAXQ9Y2V3 346 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms