RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 NELL2Q99435 816 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 FUCA2Q9BTY2 467 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TRIM6Q9C030 488 aaPredicted RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 NAT10Q9H0A0 1025 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 TMPRSS4Q9NRS4 437 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 MRPL17Q9NRX2 175 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 SAMSN1Q9NSI8 373 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 STARD5Q9NSY2 213 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 RRN3Q9NYV6 651 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 MAN1B1Q9UKM7 699 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 FBXL21Q9UKT6 434 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TPX2Q9ULW0 747 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 ZNF510Q9Y2H8 683 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ASPMQ8IZT6 3477 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 OBSL1O75147 1896 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CCDC169A6NNP5 214 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 LACTBL1A8MY62 500 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 EIF3CLB5ME19 914 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 HNRNPDLO14979 420 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 NPC1O15118 1278 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 MEFVO15553 781 aaPredicted RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 RRP8O43159 456 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 XYLBO75191 536 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 ECI2O75521 394 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 RTN3O95197 1032 aaPredicted RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 NR3C1P04150 777 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 WEE2P0C1S8 567 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 SRGAP2CP0DJJ0 459 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 KRT13P13646 458 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 CD1EP15812 388 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 HTR7P34969 479 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 GCGRP47871 477 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 ZNF132P52740 706 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 NOP14P78316 857 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 MYL7Q01449 175 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 PRKCQQ04759 706 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 BFSP1Q12934 665 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 PAK1Q13153 545 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 STX1AQ16623 288 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 C6orf132Q5T0Z8 1188 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 EEF1DP3Q658K8 133 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 KRT39Q6A163 491 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 MTSS1LQ765P7 747 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 TADA2BQ86TJ2 420 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 ZSCAN30Q86W11 494 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 CCDC150Q8NCX0 1101 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 DEPDC1BQ8WUY9 529 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 DHX58Q96C10 678 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 ERGIC2Q96RQ1 377 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 EIF3CQ99613 913 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 ZBED2Q9BTP6 218 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 TARS2Q9BW92 718 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 EIF2AQ9BY44 585 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 ZNF518BQ9C0D4 1074 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 HAPLN2Q9GZV7 340 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 SPRTNQ9H040 489 aaPredicted RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 DPP3Q9NY33 737 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 PKD2L1Q9P0L9 805 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 G3BP2Q9UN86 482 aaKnown RBP3.03□□□□□ -1.93
MCF2-208ENST00000519895 PTPRBP23467 1997 aa3.03□□□□□ -1.93
MCF2-208ENST00000519895 MYO15AQ9UKN7 3530 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 MED13LQ71F56 2210 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 PP2D1A8MPX8 630 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SART1O43290 800 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 GCNT3O95395 438 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 OLFM2O95897 454 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ZDHHC11BP0C7U3 371 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CTNNB1P35222 781 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 EIF2DP41214 584 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 RAP1GAPP47736 663 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SCNN1GP51170 649 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 VAMP7P51809 220 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CAMK1Q14012 370 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 TRIM14Q14142 442 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CLUL1Q15846 466 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SNRNP35Q16560 246 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 PREPLQ4J6C6 727 aaPredicted RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 PABPC1LQ4VXU2 614 aaKnown RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 PLPP4Q5VZY2 271 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 DESI1Q6ICB0 168 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 TRIM72Q6ZMU5 477 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 TMC7Q7Z402 723 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SYNPOQ8N3V7 929 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ZNF397Q8NF99 534 aaPredicted RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 ZNF461Q8TAF7 563 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 TNIP3Q96KP6 325 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SCLT1Q96NL6 688 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 NUP58Q9BVL2 599 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 XYLT2Q9H1B5 865 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 NUP62CLQ9H1M0 184 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 LHX5Q9H2C1 402 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 CCSER2Q9H7U1 834 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 SPATA6Q9NWH7 488 aaPredicted RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 RBAKQ9NYW8 714 aaPredicted RBP3.02□□□□□ -1.93
MCF2-208ENST00000519895 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.02□□□□□ -1.93
MCF2-208ENST00000519895 DNMT3LQ9UJW3 386 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ADAMTS9Q9P2N4 1935 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 A0A0A0MRY4 1105 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 ANKRD63C9JTQ0 380 aa3.02□□□□□ -1.93
MCF2-208ENST00000519895 DDHD2O94830 711 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms