RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 ADORA2BP29275 332 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 SERPINB9P50453 376 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NME3Q13232 169 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 C16orf72Q14CZ0 275 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ANKRD22Q5VYY1 191 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 RBM44Q6ZP01 1051 aaKnown RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 NLGN1Q8N2Q7 840 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 LRRC71Q8N4P6 559 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 CYGBQ8WWM9 190 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 ZNF669Q96BR6 464 aaPredicted RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 DNAJC1Q96KC8 554 aaKnown RBP13.31□□□□□ -0.28
SHOX2-205ENST00000490689 PHACTR1Q9C0D0 580 aa13.31□□□□□ -0.28
SHOX2-205ENST00000490689 SLC4A1P02730 911 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 LCP1P13796 627 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 GRIK3Q13003 919 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 SGSM1Q2NKQ1 1148 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 LIN52Q52LA3 116 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 DIS3LQ8TF46 1054 aaKnown RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 C10orf82Q8WW14 230 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 MRPL4Q9BYD3 311 aaKnown RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 ACSS3Q9H6R3 686 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 SLC39A10Q9ULF5 831 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 USP18Q9UMW8 372 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 ROBO3Q96MS0 1386 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 A0A0B4J269 797 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 RTN3O95197 1032 aaPredicted RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 ABL2P42684 1182 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 SLC1A6P48664 564 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 NRLP54845 237 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 ADARP55265 1226 aaKnown RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 C1QBPQ07021 282 aaKnown RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 PEX6Q13608 980 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 LBRQ14739 615 aaKnown RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 SLC5A9Q2M3M2 681 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 UNC45BQ8IWX7 931 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 KCTD17Q8N5Z5 321 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 PSPC1Q8WXF1 523 aaKnown RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 PRMT6Q96LA8 375 aaPredicted RBP13.3□□□□□ -0.28
SHOX2-205ENST00000490689 CDRT15Q96T59 188 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 SEMA6AQ9H2E6 1030 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 PLA2G4CQ9UP65 541 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 RPS6KL1Q9Y6S9 549 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 LRRC37A3O60309 1634 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 LAMA4Q16363 1823 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 MROH7Q68CQ1 1323 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 TCRBV9S1A1TA0A576 114 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 GNGT2O14610 69 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 PSMC3P17980 439 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 MAPK10P53779 464 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 CDH8P55286 799 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 DPYSL3Q14195 570 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 DHDDSQ86SQ9 333 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 CATSPER1Q8NEC5 780 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 APOL2Q9BQE5 337 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 TMEM39BQ9GZU3 492 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 KCNK4Q9NYG8 393 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 NDUFA13Q9P0J0 144 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 NALCNQ8IZF0 1738 aa13.3□□□□□ -0.28
SHOX2-205ENST00000490689 CAPN8A6NHC0 703 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 CCNB1P14635 433 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 RTP1P59025 263 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 PTF1AQ7RTS3 328 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 PTAR1Q7Z6K3 402 aaPredicted RBP13.29□□□□□ -0.28
SHOX2-205ENST00000490689 NIM1KQ8IY84 436 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 RNF169Q8NCN4 708 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 ZNF395Q9H8N7 513 aaPredicted RBP13.29□□□□□ -0.28
SHOX2-205ENST00000490689 LRRC4Q9HBW1 653 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 LGALS13Q9UHV8 139 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 MID2Q9UJV3 735 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 NOCTQ9UK39 431 aaKnown RBP13.29□□□□□ -0.28
SHOX2-205ENST00000490689 CDY2AQ9Y6F7 541 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 CDY1Q9Y6F8 540 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 CCDC189A1A4V9 331 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 IL1R1P14778 569 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 VAV1P15498 845 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 FGFR3P22607 806 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 MMRN1Q13201 1228 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 XKR3Q5GH77 459 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 FNBP1LQ5T0N5 605 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 HACE1Q8IYU2 909 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 STKLD1Q8NE28 680 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 TUBGCP5Q96RT8 1024 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 KDM3BQ7LBC6 1761 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 SPEF2Q9C093 1822 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 ARHGEF37A1IGU5 675 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 DSG3P32926 999 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 RAB27AP51159 221 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 NCKAP1LP55160 1127 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 FOXD4Q12950 439 aaPredicted RBP13.29□□□□□ -0.28
SHOX2-205ENST00000490689 SURF1Q15526 300 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 SDCCAG3Q96C92 435 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 GMCL1Q96IK5 515 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 TIPINQ9BVW5 301 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 ACSS2Q9NR19 701 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 ANKEF1Q9NU02 776 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 THAP1Q9NVV9 213 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 UBR1Q8IWV7 1749 aa13.29□□□□□ -0.28
SHOX2-205ENST00000490689 PRPF4O43172 522 aaKnown RBP eCLIP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 TMCC1O94876 653 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 USP10Q14694 798 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms