RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 FBXO22Q8NEZ5 403 aa22.7■■□□□ 1.22
SMC4-221ENST00000489573 SPPL2BQ8TCT7 592 aa22.7■■□□□ 1.22
SMC4-221ENST00000489573 C2orf15Q8WU43 125 aaKnown RBP22.7■■□□□ 1.22
SMC4-221ENST00000489573 FAM149B1Q96BN6 582 aa22.7■■□□□ 1.22
SMC4-221ENST00000489573 RPGRIP1Q96KN7 1286 aa22.7■■□□□ 1.22
SMC4-221ENST00000489573 RAD9AQ99638 391 aa22.7■■□□□ 1.22
SMC4-221ENST00000489573 CDY1Q9Y6F8 540 aa22.7■■□□□ 1.22
SMC4-221ENST00000489573 MTMR11A4FU01 709 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 PGRMC1O00264 195 aaKnown RBP22.69■■□□□ 1.22
SMC4-221ENST00000489573 TRIM66O15016 1216 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 LRCH4O75427 683 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 DAB1O75553 588 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 RNF8O76064 485 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 GLI1P08151 1106 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 GTF2F1P35269 517 aaKnown RBP eCLIP22.69■■□□□ 1.228e-49■■■■■ 172.1
SMC4-221ENST00000489573 DSG1Q02413 1049 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 ZNF211Q13398 564 aaPredicted RBP22.69■■□□□ 1.22
SMC4-221ENST00000489573 SEL1L2Q5TEA6 688 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 SLC8B1Q6J4K2 584 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 SCN4BQ8IWT1 228 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 SCML4Q8N228 414 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 SP7Q8TDD2 431 aaPredicted RBP22.69■■□□□ 1.22
SMC4-221ENST00000489573 NDRG1Q92597 394 aaKnown RBP22.69■■□□□ 1.22
SMC4-221ENST00000489573 C8orf48Q96LL4 319 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 RNPC3Q96LT9 517 aaKnown RBP22.69■■□□□ 1.22
SMC4-221ENST00000489573 CFAP57Q96MR6 1250 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 TTC7AQ9ULT0 858 aaPredicted RBP22.69■■□□□ 1.22
SMC4-221ENST00000489573 KIAA1671Q9BY89 1806 aa22.69■■□□□ 1.22
SMC4-221ENST00000489573 UQCRHLA0A096LP55 91 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 EFCAB8A8MWE9 144 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 ZBED1O96006 694 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 UQCRHP07919 91 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 LINC00271P0C7V0 271 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 TCF4P15884 667 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 GJC1P36383 396 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 PTPN9P43378 593 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 CCDC14Q49A88 953 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 RNF19BQ6ZMZ0 732 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 KATNAL2Q8IYT4 538 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 ARFGAP1Q8N6T3 406 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 ATAD1Q8NBU5 361 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 CLP1Q92989 425 aaKnown RBP22.68■■□□□ 1.22
SMC4-221ENST00000489573 PLVAPQ9BX97 442 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.68■■□□□ 1.223e-18■■■■■ 78.4
SMC4-221ENST00000489573 STK39Q9UEW8 545 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 PATJQ8NI35 1801 aa22.68■■□□□ 1.22
SMC4-221ENST00000489573 C2CD2LO14523 706 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 CTIFO43310 598 aaKnown RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 TLL1O43897 1013 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 URODP06132 367 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 USP17L7P0C7H9 530 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 PCK1P35558 622 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 SLC5A3P53794 718 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 YWHAZP63104 245 aaKnown RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 HADHQ16836 314 aaKnown RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 C15orf59Q2T9L4 293 aaPredicted RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 IRGQQ8WZA9 623 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 GOLGA1Q92805 767 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 DDX23Q9BUQ8 820 aaKnown RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 USP3Q9Y6I4 520 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 ADAM12O43184 909 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 PYGMP11217 842 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 RPL17P18621 184 aaKnown RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 MATKP42679 507 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 ROR1Q01973 937 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 SLC25A11Q02978 314 aaKnown RBP22.67■■□□□ 1.22
SMC4-221ENST00000489573 KRT17Q04695 432 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 ITIH3Q06033 890 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 CLUL1Q15846 466 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 RASIP1Q5U651 963 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 PM20D1Q6GTS8 502 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 POLNQ7Z5Q5 900 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 VPS52Q8N1B4 723 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 SLC2A13Q96QE2 648 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 NCAPGQ9BPX3 1015 aa22.67■■□□□ 1.22
SMC4-221ENST00000489573 WDR27A2RRH5 827 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 TNFRSF10BO14763 440 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 FGF18O76093 207 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 VNN2O95498 520 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 MIPP30301 263 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 OR1D2P34982 312 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 ATP11AP98196 1134 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 CDO1Q16878 200 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 DEFB106AQ8N104 65 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 TTC9BQ8N6N2 239 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 SPATA4Q8NEY3 305 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 FAM172AQ8WUF8 416 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 NAP1L3Q99457 506 aaPredicted RBP22.66■■□□□ 1.22
SMC4-221ENST00000489573 POPDC2Q9HBU9 364 aa22.66■■□□□ 1.22
SMC4-221ENST00000489573 DDX56Q9NY93 547 aaKnown RBP22.66■■□□□ 1.22
SMC4-221ENST00000489573 YJEFN3A6XGL0 299 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 E7ENQ6 273 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 FGGP02679 453 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 KRT7P08729 469 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 HAPLN1P10915 354 aaPredicted RBP22.65■■□□□ 1.22
SMC4-221ENST00000489573 GPR15P49685 360 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 C2orf54Q08AI8 447 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 TEX35Q5T0J7 233 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 SH3PXD2AQ5TCZ1 1133 aa22.65■■□□□ 1.22
SMC4-221ENST00000489573 AADACL2Q6P093 401 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms