RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZNF276Q8N554 614 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 PDZD8Q8NEN9 1154 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 B3GALT6Q96L58 329 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 CDK5RAP1Q96SZ6 601 aaKnown RBP10.67□□□□□ -0.7
USP39-215ENST00000481409 KCNK16Q96T55 309 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 NAPGQ99747 312 aaPredicted RBP10.67□□□□□ -0.7
USP39-215ENST00000481409 TCF25Q9BQ70 676 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 LPIN3Q9BQK8 851 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 PBX4Q9BYU1 374 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 PLEKHA4Q9H4M7 779 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 SLC28A3Q9HAS3 691 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 POPDC2Q9HBU9 364 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 ENTPD7Q9NQZ7 604 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 UXTQ9UBK9 157 aaPredicted RBP10.67□□□□□ -0.7
USP39-215ENST00000481409 TRIM10Q9UDY6 481 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 SALL4Q9UJQ4 1053 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 STAP1Q9ULZ2 295 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 SCML2Q9UQR0 700 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP39-215ENST00000481409 ALG6Q9Y672 507 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 CAPN6Q9Y6Q1 641 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 GBF1Q92538 1859 aa10.67□□□□□ -0.7
USP39-215ENST00000481409 A0A0U1RQJ8 604 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 GRID2IPA4D2P6 1211 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 C2orf71A6NGG8 1288 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 C2CD2LO14523 706 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 TEX28O15482 410 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 BUB1BO60566 1050 aaPredicted RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 DAB1O75553 588 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 RNF8O76064 485 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 PROSCO94903 275 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 ABL1P00519 1130 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 POU2F2P09086 479 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 CNPP09543 421 aaKnown RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 LCP1P13796 627 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 TCP1P17987 556 aaKnown RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 GPD1P21695 349 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 HOXA9P31269 272 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 NOS2P35228 1153 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 MATKP42679 507 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 ARPP19P56211 112 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 MTA1Q13330 715 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 GPM6BQ13491 265 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 PTPROQ16827 1216 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 HADHQ16836 314 aaKnown RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 DNTTIP2Q5QJE6 756 aaKnown RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 CYP4A22Q5TCH4 519 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 MEI1Q5TIA1 1274 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 PAPD7Q5XG87 772 aaKnown RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 PPP2R2DQ66LE6 453 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 LILRA6Q6PI73 481 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 STRADAQ7RTN6 431 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 PEX26Q7Z412 305 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 TADA2BQ86TJ2 420 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 NT5DC3Q86UY8 548 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 SCN4BQ8IWT1 228 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 SCUBE3Q8IX30 993 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 SLC35F6Q8N357 371 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 UBL4BQ8N7F7 174 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 ATAD1Q8NBU5 361 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 ATRIPQ8WXE1 791 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 PPP2R3CQ969Q6 453 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 TRMT2BQ96GJ1 504 aaKnown RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 MCEEQ96PE7 176 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 KLHL5Q96PQ7 755 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 SLC2A13Q96QE2 648 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 CDCA3Q99618 268 aaPredicted RBP10.66□□□□□ -0.7
USP39-215ENST00000481409 C17orf80Q9BSJ5 609 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 CNPY3Q9BT09 278 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 TTLL2Q9BWV7 592 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 PRO3102Q9H379 93 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 ABCC13Q9NSE7 274 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 RNF14Q9UBS8 474 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 DNAI1Q9UI46 699 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 TFR2Q9UP52 801 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 COG5Q9UP83 839 aa10.66□□□□□ -0.7
USP39-215ENST00000481409 C2CD4BA6NLJ0 364 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 GOLGA8SH3BPF8 625 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 ATMINO43313 823 aaPredicted RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 PSTPIP1O43586 416 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 FGF19O95750 216 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 GLUD1P00367 558 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 F9P00740 461 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 LTFP02788 710 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 PDGFRAP16234 1089 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 CTNNA2P26232 953 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 KLRC2P26717 231 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 YWHAQP27348 245 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 SDC4P31431 198 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 RFC1P35251 1148 aaPredicted RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 CACNA2D1P54289 1103 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 EPHB3P54753 998 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 AIF1P55008 147 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 DUSP4Q13115 394 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 MESDQ14696 234 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 RPS6KA1Q15418 735 aa10.65□□□□□ -0.7
USP39-215ENST00000481409 PABPC1LQ4VXU2 614 aaKnown RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 ACBD5Q5T8D3 534 aaPredicted RBP10.65□□□□□ -0.7
USP39-215ENST00000481409 SNX30Q5VWJ9 437 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms