RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 FBXL21Q9UKT6 434 aa12.92□□□□□ -0.34
PTPRF-213ENST00000481019 CNTN6Q9UQ52 1028 aa12.92□□□□□ -0.34
PTPRF-213ENST00000481019 HELZP42694 1942 aaKnown RBP12.92□□□□□ -0.34
PTPRF-213ENST00000481019 GTPBP10A4D1E9 387 aaKnown RBP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 RTN3O95197 1032 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 ABL1P00519 1130 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 OAS1P00973 400 aaKnown RBP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 ZDHHC11BP0C7U3 371 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 CD72P21854 359 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 DDX6P26196 483 aaKnown RBP eCLIP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 KIF11P52732 1056 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 TNK2Q07912 1038 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 PDE4CQ08493 712 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 FCHO2Q0JRZ9 810 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 ARHGAP44Q17R89 818 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 SLC44A4Q53GD3 710 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 SGO2Q562F6 1265 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 SCD5Q86SK9 330 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 DRC7Q8IY82 874 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 TMEM105Q8N8V8 129 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 ANKRD52Q8NB46 1076 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 WBP2Q969T9 261 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 FAM124BQ9H5Z6 455 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 CCSER2Q9H7U1 834 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 ARHGEF3Q9NR81 526 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 HEBP1Q9NRV9 189 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 TDP1Q9NUW8 608 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 LIMA1Q9UHB6 759 aaKnown RBP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 MTF2Q9Y483 593 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-213ENST00000481019 DMDP11532 3685 aa12.91□□□□□ -0.34
PTPRF-213ENST00000481019 TRAV19A0A0A6YYK7 116 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 A0A1W2PQH9 124 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 OTOL1A6NHN0 477 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-213ENST00000481019 SCAMP3O14828 347 aaKnown RBP12.9□□□□□ -0.34
PTPRF-213ENST00000481019 COCHO43405 550 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 OLFM2O95897 454 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 TBX18O95935 607 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 PAEPP09466 180 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 VDRP11473 427 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 ATP1A3P13637 1013 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 KRT5P13647 590 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 HDCP19113 662 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 AVPR1AP37288 418 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 SOX9P48436 509 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 ZNF75DP51815 510 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 YWHAEP62258 255 aaKnown RBP12.9□□□□□ -0.34
PTPRF-213ENST00000481019 ZNF77Q15935 545 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 RAB41Q5JT25 222 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 TRIM68Q6AZZ1 485 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 LCLAT1Q6UWP7 414 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 BHLHA9Q7RTU4 235 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 PIGZQ86VD9 579 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 FBXL6Q8N531 539 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 CELF5Q8N6W0 485 aaKnown RBP12.9□□□□□ -0.34
PTPRF-213ENST00000481019 TTC16Q8NEE8 873 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 FLCNQ8NFG4 579 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 DEPDC1BQ8WUY9 529 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 IQCDQ96DY2 449 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 CHFRQ96EP1 664 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 ZFRQ96KR1 1074 aaKnown RBP12.9□□□□□ -0.34
PTPRF-213ENST00000481019 PPP1R9BQ96SB3 815 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 FOXQ1Q9C009 403 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 BRD9Q9H8M2 597 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 OBP2AQ9NY56 170 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 APEX2Q9UBZ4 518 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 SCML2Q9UQR0 700 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 USP3Q9Y6I4 520 aa12.9□□□□□ -0.34
PTPRF-213ENST00000481019 FOXN3O00409 490 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 PIK3R2O00459 728 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 PES1O00541 588 aaKnown RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 DPYSL4O14531 572 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 ZNF263O14978 683 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 EPHB6O15197 1021 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 NRDCO43847 1150 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 CKMP06732 381 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 USP17L7P0C7H9 530 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 ARSAP15289 507 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 COPB1P53618 953 aaKnown RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 USP4Q13107 963 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 ZNF268Q14587 947 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 MLF2Q15773 248 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 FKBP15Q5T1M5 1219 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 SNX30Q5VWJ9 437 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 DENND1BQ6P3S1 775 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 BPIFB1Q8TDL5 484 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 SH3RF2Q8TEC5 729 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 SHC3Q92529 594 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 SECISBP2LQ93073 1101 aaKnown RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 TRIM44Q96DX7 344 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 PDLIM2Q96JY6 352 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 SLITRK1Q96PX8 696 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 DDX23Q9BUQ8 820 aaKnown RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 LSM14BQ9BX40 385 aaKnown RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 NAA15Q9BXJ9 866 aaKnown RBP12.89□□□□□ -0.35
PTPRF-213ENST00000481019 TBC1D17Q9HA65 648 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 PNPLA8Q9NP80 782 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 HPS4Q9NQG7 708 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 GKN1Q9NS71 199 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 COMMD8Q9NX08 183 aa12.89□□□□□ -0.35
PTPRF-213ENST00000481019 SMPD4Q9NXE4 827 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms