RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 UBQLN1Q9UMX0 589 aaKnown RBP8.66□□□□□ -1.02
USP54-211ENST00000474929 NBASA2RRP1 2371 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 KNL1Q8NG31 2342 aa8.66□□□□□ -1.02
USP54-211ENST00000474929 SETD2Q9BYW2 2564 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 TTLL13PA6NNM8 815 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 CCER2I3L3R5 266 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 LEFTY2O00292 366 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 TADA3O75528 432 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 BAG4O95429 457 aaKnown RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 GJB6O95452 261 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 MPOP05164 745 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 KRT10P13645 584 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 ACP1P24666 158 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 CASRP41180 1078 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 SLC6A11P48066 632 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 PPP3CCP48454 512 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 OXCT1P55809 520 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 NLRP5P59047 1200 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 SKOR1P84550 965 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 ATP2C1P98194 919 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 ST3GAL1Q11201 340 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 CTTNQ14247 550 aaKnown RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 NCAPHQ15003 741 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 LINC00303Q3SY05 128 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 HS1BP3Q53T59 392 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 ETFBKMTQ8IXQ9 262 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 ZNF564Q8TBZ8 553 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 LEO1Q8WVC0 666 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 PRCCQ92733 491 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 SGF29Q96ES7 293 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 CEP295NLQ96MC4 621 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 EPN3Q9H201 632 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 TM9SF3Q9HD45 589 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 ASCL3Q9NQ33 180 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 RGL1Q9NZL6 768 aa8.65□□□□□ -1.02
USP54-211ENST00000474929 ORC3Q9UBD5 711 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 ATXN7L1Q9ULK2 861 aaPredicted RBP8.65□□□□□ -1.02
USP54-211ENST00000474929 PCNX1Q96RV3 2341 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 ANTXRLA6NF34 631 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 TRIM66O15016 1216 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 VILLO15195 856 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 EDIL3O43854 480 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 TPMTP51580 245 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 BCAT1P54687 386 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 OSTNP61366 133 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 SLC7A9P82251 487 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 MYL7Q01449 175 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 TSPY1Q01534 308 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 ZSCAN23Q3MJ62 389 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 EGFLAMQ63HQ2 1017 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 GRAMD4Q6IC98 578 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 GALNT17Q6IS24 598 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 KANSL1Q7Z3B3 1105 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 C12orf40Q86WS4 652 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 SFTPA1Q8IWL2 248 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 CEP120Q8N960 986 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 OR10T2Q8NGX3 314 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 SIPA1Q96FS4 1042 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 XPO6Q96QU8 1125 aaKnown RBP8.64□□□□□ -1.03
USP54-211ENST00000474929 DUSP9Q99956 384 aaKnown RBP8.64□□□□□ -1.03
USP54-211ENST00000474929 MRPL4Q9BYD3 311 aaKnown RBP8.64□□□□□ -1.03
USP54-211ENST00000474929 ZDHHC4Q9NPG8 344 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 GEMIN8Q9NWZ8 242 aaKnown RBP8.64□□□□□ -1.03
USP54-211ENST00000474929 TUBGCP4Q9UGJ1 667 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.64□□□□□ -1.03
USP54-211ENST00000474929 TAF6LQ9Y6J9 622 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 LRBAP50851 2863 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 ABCA2Q9BZC7 2435 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 F8P00451 2351 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 BSNQ9UPA5 3926 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 CENPEQ02224 2701 aa8.64□□□□□ -1.03
USP54-211ENST00000474929 CACNA1DQ01668 2161 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 K7ERI5 159 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 PRPF3O43395 683 aaKnown RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 USP12O75317 370 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 TULP3O75386 442 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 PRPF40AO75400 957 aaKnown RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 SLITRK3O94933 977 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 AGFG2O95081 481 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 FAM87AP0C7U9 286 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 CD27P26842 260 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 EPHA8P29322 1005 aaPredicted RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 WASP42768 502 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 TRAPPC10P48553 1259 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 RACK1P63244 317 aaKnown RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 IL9RQ01113 521 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 KYAT1Q16773 422 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 RHBDF2Q6PJF5 856 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 MPZL3Q6UWV2 235 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 ARL14Q8N4G2 192 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 EID2Q8N6I1 236 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 ZSCAN1Q8NBB4 408 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 SAP25Q8TEE9 199 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 KIFAP3Q92845 792 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 EXTL1Q92935 676 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 SENP8Q96LD8 212 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 SLC22A12Q96S37 553 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 CYP2S1Q96SQ9 504 aa8.63□□□□□ -1.03
USP54-211ENST00000474929 EIF2AK1Q9BQI3 630 aaKnown RBP8.63□□□□□ -1.03
USP54-211ENST00000474929 TCHPQ9BT92 498 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms