RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PIK3CAP42336 1068 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 NDST1P52848 882 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 ARHGAP8P85298 464 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 NR1H3Q13133 447 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 ZCWPW2Q504Y3 356 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 PDZD8Q8NEN9 1154 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 GAB3Q8WWW8 586 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 EXOC4Q96A65 974 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 HHIPQ96QV1 700 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 MED10Q9BTT4 135 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 CFAP97Q9P2B7 532 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 COCHO43405 550 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 RPP40O75818 363 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 AP1G2O75843 785 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 BEST1O76090 585 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 P4HA1P13674 534 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 VAMP7P51809 220 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 SNX30Q5VWJ9 437 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 CEP68Q76N32 757 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 SYT13Q7L8C5 426 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 CRYBG2Q8N1P7 616 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 GUF1Q8N442 669 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 CAMKK1Q8N5S9 505 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 SLC2A14Q8TDB8 520 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 SMOQ99835 787 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 GDPD2Q9HCC8 539 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 CSNK1G1Q9HCP0 422 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 SEMA4GQ9NTN9 838 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 ATP6V1DQ9Y5K8 247 aa19.93■□□□□ 0.78
CCDC88B-206ENST00000473405 ANTXRLA6NF34 631 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 K7EQS6 105 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 KIF20AO95235 890 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 ZDHHC11BP0C7U3 371 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 MBL2P11226 248 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 PPP3CAQ08209 521 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 INCA1Q0VD86 236 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 MESP2Q0VG99 397 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 INTS8Q75QN2 995 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 UNC93AQ86WB7 457 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 ADGRG2Q8IZP9 1017 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 C12orf29Q8N999 325 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 TWNKQ96RR1 684 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 CCSER2Q9H7U1 834 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 APOBEC3GQ9HC16 384 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 FAM49BQ9NUQ9 324 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 GMIPQ9P107 970 aa19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 CDV3Q9UKY7 258 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-206ENST00000473405 CNOT1A5YKK6 2376 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 ACACBO00763 2458 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 ZNF202O95125 648 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 CHRM1P11229 460 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 SDHBP21912 280 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 GCLMP48507 274 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 PGFP49763 221 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 TUBP50607 506 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 ATXN1P54253 815 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 DMC1Q14565 340 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 DHCR24Q15392 516 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 CSRP2Q16527 193 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 PRR23CQ6ZRP0 262 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 KBTBD6Q86V97 674 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 DDX42Q86XP3 938 aaKnown RBP eCLIP19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 SFTPA1Q8IWL2 248 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 FAM186BQ8IYM0 893 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 TAS1R2Q8TE23 839 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 CCDC47Q96A33 483 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 ACDQ96AP0 544 aa19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 CHORDC1Q9UHD1 332 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-206ENST00000473405 SLC9A3R1O14745 358 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 MCCD1P59942 119 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 ENPEPQ07075 957 aa19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 HECTD3Q5T447 861 aa19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 RHBDF2Q6PJF5 856 aa19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 C12orf40Q86WS4 652 aa19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 SMYD4Q8IYR2 804 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 USP33Q8TEY7 942 aa19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 COMMD8Q9NX08 183 aa19.9■□□□□ 0.78
CCDC88B-206ENST00000473405 E2F8A0AVK6 867 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 AXIN1O15169 862 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 APBB3O95704 486 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 CCDC192P0DO97 292 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 SEC13P55735 322 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 MAP3K7CLP57077 242 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 CLEC20AQ6ZU45 233 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 GPRIN1Q7Z2K8 1008 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 CACNA2D4Q7Z3S7 1137 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 NIF3L1Q9GZT8 377 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 EBF1Q9UH73 591 aa19.89■□□□□ 0.77
CCDC88B-206ENST00000473405 NUP205Q92621 2012 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 HHLA1C9JL84 531 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 EPN2O95208 641 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 ADH1CP00326 375 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 ADH5P11766 374 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 RPL13P26373 211 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 ADORA2BP29275 332 aa19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 PSMC2P35998 433 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 EIF2DP41214 584 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-206ENST00000473405 SLC6A11P48066 632 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms