RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 TUBP50607 506 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 ZNF658Q5TYW1 1059 aaPredicted RBP13.22□□□□□ -0.29
CPSF4-208ENST00000452047 LONP2Q86WA8 852 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 ZC3H3Q8IXZ2 948 aaKnown RBP13.22□□□□□ -0.29
CPSF4-208ENST00000452047 WHAMMQ8TF30 809 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 ERCC4Q92889 916 aaPredicted RBP13.22□□□□□ -0.29
CPSF4-208ENST00000452047 MMRN2Q9H8L6 949 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 CYP3A43Q9HB55 503 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 FAM49BQ9NUQ9 324 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 COMMD8Q9NX08 183 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 SMPD4Q9NXE4 827 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 NCDNQ9UBB6 729 aa13.22□□□□□ -0.29
CPSF4-208ENST00000452047 MYOFQ9NZM1 2061 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 GOLGA6L4A6NEF3 574 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 COCHO43405 550 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 HRO43593 1189 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 CILPO75339 1184 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 CYP17A1P05093 508 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 OPRD1P41143 372 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 PGFP49763 221 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 MXI1P50539 228 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 PMS1P54277 932 aaKnown RBP13.21□□□□□ -0.29
CPSF4-208ENST00000452047 MAP3K7CLP57077 242 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 FBXO43Q4G163 708 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 KRT39Q6A163 491 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 CLEC20AQ6ZU45 233 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 FILIP1Q7Z7B0 1213 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 SEMA4DQ92854 862 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 CD101Q93033 1021 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 TIGD1Q96MW7 591 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 HNRNPABQ99729 332 aaKnown RBP13.21□□□□□ -0.29
CPSF4-208ENST00000452047 NT5C1AQ9BXI3 368 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 GMIPQ9P107 970 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 CFAP97Q9P2B7 532 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 CHORDC1Q9UHD1 332 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-208ENST00000452047 PCDHA5Q9Y5H7 936 aa13.21□□□□□ -0.29
CPSF4-208ENST00000452047 SPAG17Q6Q759 2223 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 HHLA1C9JL84 531 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 SCAMP3O14828 347 aaKnown RBP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 CETN3O15182 167 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 ATG13O75143 517 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 FAM200BP0CF97 657 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 EPB41P11171 864 aaKnown RBP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 MBL2P11226 248 aaPredicted RBP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 CD58P19256 250 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 TGM1P22735 817 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 CNR2P34972 360 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 ID4P47928 161 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 NR1H3Q13133 447 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 SRSF5Q13243 272 aaKnown RBP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 HECTD3Q5T447 861 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 HEATR6Q6AI08 1181 aaKnown RBP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 GPRIN1Q7Z2K8 1008 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 WDR5BQ86VZ2 330 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 DDX42Q86XP3 938 aaKnown RBP eCLIP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 ADGRG2Q8IZP9 1017 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 FBXL13Q8NEE6 735 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 EXOC4Q96A65 974 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 CYFIP2Q96F07 1278 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 FAXDC2Q96IV6 333 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 DUSP9Q99956 384 aaKnown RBP13.2□□□□□ -0.3
CPSF4-208ENST00000452047 CCSER2Q9H7U1 834 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 PNPLA8Q9NP80 782 aa13.2□□□□□ -0.3
CPSF4-208ENST00000452047 CCDC163A0A0D9SF12 145 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 E2F8A0AVK6 867 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 TRIM49BA6NDI0 452 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 SLC9A3R1O14745 358 aaPredicted RBP13.19□□□□□ -0.3
CPSF4-208ENST00000452047 SLC16A3O15427 465 aaKnown RBP13.19□□□□□ -0.3
CPSF4-208ENST00000452047 SMC2O95347 1197 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 ADORA2BP29275 332 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 FKBP3Q00688 224 aaKnown RBP13.19□□□□□ -0.3
CPSF4-208ENST00000452047 LRRC63Q05C16 580 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 DHCR24Q15392 516 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 LPAL2Q16609 132 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 CBWD6Q4V339 395 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 CBWD3Q5JTY5 395 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 CBWD5Q5RIA9 395 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 ANKRD40Q6AI12 368 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 LAIR1Q6GTX8 287 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 CCDC150Q8NCX0 1101 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 RPLP0P6Q8NHW5 317 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 SECISBP2LQ93073 1101 aaKnown RBP13.19□□□□□ -0.3
CPSF4-208ENST00000452047 SMARCE1Q969G3 411 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 RMDN1Q96DB5 314 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 ARID3AQ99856 593 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 FBXO44Q9H4M3 255 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 POLR3BQ9NW08 1133 aaPredicted RBP13.19□□□□□ -0.3
CPSF4-208ENST00000452047 RAB20Q9NX57 234 aa13.19□□□□□ -0.3
CPSF4-208ENST00000452047 STX10O60499 249 aa13.18□□□□□ -0.3
CPSF4-208ENST00000452047 TLR5O60602 858 aa13.18□□□□□ -0.3
CPSF4-208ENST00000452047 CHRM1P11229 460 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-208ENST00000452047 TRIM21P19474 475 aaKnown RBP13.18□□□□□ -0.3
CPSF4-208ENST00000452047 PXNP49023 591 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-208ENST00000452047 MESP2Q0VG99 397 aa13.18□□□□□ -0.3
CPSF4-208ENST00000452047 SIM2Q14190 667 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-208ENST00000452047 PPP1R26Q5T8A7 1209 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-208ENST00000452047 RHBDF2Q6PJF5 856 aa13.18□□□□□ -0.3
CPSF4-208ENST00000452047 PRR23BQ6ZRT6 265 aa13.18□□□□□ -0.3
CPSF4-208ENST00000452047 SYT13Q7L8C5 426 aa13.18□□□□□ -0.3
CPSF4-208ENST00000452047 ELOA2Q8IYF1 753 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms