RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 UPP1Q16831 310 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 BOLA3Q53S33 107 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 WSCD1Q658N2 575 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 LRIG3Q6UXM1 1119 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 CEP128Q6ZU80 1094 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 VSIG1Q86XK7 387 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 ECHDC2Q86YB7 292 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 MAP7D3Q8IWC1 876 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 KCTD6Q8NC69 237 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 RNF169Q8NCN4 708 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 CMASQ8NFW8 434 aaPredicted RBP11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 ZNF296Q8WUU4 475 aaPredicted RBP11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 TEKT4Q8WW24 435 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 TBCBQ99426 244 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 DUSP16Q9BY84 665 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 RGS18Q9NS28 235 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 CHST7Q9NS84 486 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 MIOSQ9NXC5 875 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 DRG1Q9Y295 367 aaKnown RBP11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 PTPN22Q9Y2R2 807 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 SNX24Q9Y343 169 aa11.07□□□□□ -0.64
VIPAS39-203ENST00000448935 H3BQF6 201 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 PAPSS1O43252 624 aaPredicted RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 FAM200BP0CF97 657 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 COL6A1P12109 1028 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TCF4P15884 667 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 NPR3P17342 541 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 RDXP35241 583 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 GGCXP38435 758 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 RPL21P46778 160 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 KCNJ1P48048 391 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 PLTPP55058 493 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 BFSP2Q13515 415 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TFDP2Q14188 446 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 PDK2Q15119 407 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TAZQ16635 292 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ATP13A4Q4VNC1 1196 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 SWT1Q5T5J6 900 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 KAZNQ674X7 775 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 GLB1LQ6UWU2 654 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 BBS12Q6ZW61 710 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 SLC24A5Q71RS6 500 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 OSTM1Q86WC4 334 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 IQCKQ8N0W5 287 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TSEN2Q8NCE0 465 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 KCTD13Q8WZ19 329 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 RAPGEF5Q92565 580 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 SNF8Q96H20 258 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 SYT15Q9BQS2 421 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 MED10Q9BTT4 135 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ZDHHC18Q9NUE0 388 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 KANSL3Q9P2N6 904 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ASIC3Q9UHC3 531 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 PTCH2Q9Y6C5 1203 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 CASTOR2A6NHX0 329 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 GOLGA6L10A6NI86 522 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TULP2O00295 520 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 POLR3GO15318 223 aaPredicted RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 LIASO43766 372 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 PPFIA2O75334 1257 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 CYP11A1P05108 521 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ATF2P15336 505 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 FLT3P36888 993 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 DHX9Q08211 1270 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 BYSLQ13895 437 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 LLGL1Q15334 1064 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 MAPRE1Q15691 268 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 DCLRE1AQ6PJP8 1040 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 GSTA5Q7RTV2 222 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TMC3Q7Z5M5 1100 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 CROCCP2Q86T23 111 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ZNF598Q86UK7 904 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 SCUBE3Q8IX30 993 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 FUKQ8N0W3 1084 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ARFGAP1Q8N6T3 406 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 URGCPQ8TCY9 931 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ATG4AQ8WYN0 398 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ART4Q93070 314 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 NKD2Q969F2 451 aaPredicted RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ZIM3Q96PE6 472 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 SH3GL2Q99962 352 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 HERPUD2Q9BSE4 406 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 MAK16Q9BXY0 300 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 TRPV6Q9H1D0 765 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 NEUROG2Q9H2A3 272 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 LRRC4Q9HBW1 653 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 KLHL11Q9NVR0 708 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 GRHL1Q9NZI5 618 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 PCSK1NQ9UHG2 260 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 ZNF148Q9UQR1 794 aa11.06□□□□□ -0.64
VIPAS39-203ENST00000448935 C3orf70A6NLC5 250 aaPredicted RBP11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 ZNF487B1APH4 448 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 C9IYK1 514 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 AGPSO00116 658 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 DNM1LO00429 736 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 PIK3R2O00459 728 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 MDM4O15151 490 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 RNF40O75150 1001 aa11.05□□□□□ -0.64
VIPAS39-203ENST00000448935 B3GAT3O94766 335 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms