RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 AGTP01019 485 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 HOXC6P09630 235 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 CTCFP49711 727 aaPredicted RBP12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 COPS2P61201 443 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 ATP13A4Q4VNC1 1196 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 PDCD7Q8N8D1 485 aaKnown RBP12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 CHST7Q9NS84 486 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 SPATS2LQ9NUQ6 558 aaKnown RBP12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 COQ4Q9Y3A0 265 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 PCDHB7Q9Y5E2 793 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 SPAG7O75391 227 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 DARSP14868 501 aaKnown RBP12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 MLH1P40692 756 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 GRM5P41594 1212 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 ARHGAP1Q07960 439 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 PDE1CQ14123 709 aaPredicted RBP12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 ITPRIPL1Q6GPH6 555 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 C3orf62Q6ZUJ4 267 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 RYBPQ8N488 228 aaPredicted RBP12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 ETNK1Q9HBU6 452 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 SUFUQ9UMX1 484 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 COL1A2P08123 1366 aa12.04□□□□□ -0.48
TRAPPC9-202ENST00000438773 A0A0G2JND7 137 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 ZBTB24O43167 697 aaPredicted RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 ATP9BO43861 1147 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 PRKAR2AP13861 404 aaKnown RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 MIPP30301 263 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 HSPA9P38646 679 aaKnown RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 TKTL1P51854 596 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 ADIGQ0VDE8 80 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 SENP8Q96LD8 212 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 TSPYL2Q9H2G4 693 aaPredicted RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 ZC3H7BQ9UGR2 993 aaKnown RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 C22orf31O95567 290 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 RARGP13631 454 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 CCDC130P13994 396 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 SCNN1GP51170 649 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 NBPF20Q3BBV1 942 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 PHF13Q86YI8 300 aaPredicted RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 MREGQ8N565 214 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 C12orf29Q8N999 325 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 C1orf127Q8N9H9 656 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 CCT6BQ92526 530 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 PPP2R3CQ969Q6 453 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 DDX27Q96GQ7 796 aaKnown RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 DCLK3Q9C098 648 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 VCXQ9H320 206 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 AP4E1Q9UPM8 1137 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 GOLGA8RI6L899 631 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 BNIP3LO60238 219 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 MSCO60682 206 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 CRYBB1P53674 252 aaPredicted RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 PDK1Q15118 436 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 PDK2Q15119 407 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 OVOS1Q6IE37 1185 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 TRIM42Q8IWZ5 723 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 PPIL6Q8IXY8 311 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 AFAP1L2Q8N4X5 818 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 MIPOL1Q8TD10 442 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 USP33Q8TEY7 942 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 SEMA4AQ9H3S1 761 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 WDCPQ9H6R7 721 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 hCG_2014768A0A024R1R8 64 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 SMIM35A0A1B0GVV1 85 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 H0YGN5 161 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 RPL21P46778 160 aaKnown RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 MRPS6P82932 125 aaKnown RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 MBTD1Q05BQ5 628 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 VEPH1Q14D04 833 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 SNX17Q15036 470 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 RAPGEF5Q92565 580 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 ZNF512Q96ME7 567 aaPredicted RBP12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 WHRNQ9P202 907 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 ST3GAL5Q9UNP4 418 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 TELO2Q9Y4R8 837 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 NFS1Q9Y697 457 aa12.03□□□□□ -0.48
TRAPPC9-202ENST00000438773 A0A1B0GUL6 1792 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 RASSF9O75901 435 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 RAB27AP51159 221 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 EPHB1P54762 984 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 BFSP2Q13515 415 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 WSCD1Q658N2 575 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 C6orf89Q6UWU4 347 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 SEC16BQ96JE7 1060 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 PRMT1Q99873 361 aaKnown RBP12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 SLC13A1Q9BZW2 595 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 FZD8Q9H461 694 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 PDZD7Q9H5P4 517 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 SP110Q9HB58 689 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 APOBEC3GQ9HC16 384 aaKnown RBP12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 TJP2Q9UDY2 1190 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 NR2E1Q9Y466 385 aa12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.02□□□□□ -0.48
TRAPPC9-202ENST00000438773 THSD7AQ9UPZ6 1657 aa12.02□□□□□ -0.49
TRAPPC9-202ENST00000438773 SIGLEC16A6NMB1 481 aa12.02□□□□□ -0.49
TRAPPC9-202ENST00000438773 CLGNO14967 610 aa12.02□□□□□ -0.49
TRAPPC9-202ENST00000438773 ELNP15502 786 aa12.02□□□□□ -0.49
TRAPPC9-202ENST00000438773 PCBP1Q15365 356 aaKnown RBP eCLIP12.02□□□□□ -0.49
TRAPPC9-202ENST00000438773 SLC39A4Q6P5W5 647 aa12.02□□□□□ -0.49
TRAPPC9-202ENST00000438773 KDELC2Q7Z4H8 507 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms