RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 VNN1O95497 513 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 MYL4P12829 197 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 PTH2RP49190 550 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 GATMP50440 423 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 PGDP52209 483 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 EEFSECP57772 596 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 CYP1B1Q16678 543 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 TBC1D25Q3MII6 688 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 FAM209BQ5JX69 171 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 AKNAD1Q5T1N1 836 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 MANEALQ5VSG8 457 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 IZUMO3Q5VZ72 239 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 HIBCHQ6NVY1 386 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 TNIP3Q96KP6 325 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 FAM227BQ96M60 508 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 SELENOOQ9BVL4 669 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 FSD1LQ9BXM9 530 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 EIF2AQ9BY44 585 aaKnown RBP6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 ZCWPW1Q9H0M4 648 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 CPNE5Q9HCH3 593 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 ASB6Q9NWX5 421 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 ARPP21Q9UBL0 812 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 COL11A2P13942 1736 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 POLR2AP24928 1970 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 M0R3H8 397 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 PSMD9O00233 223 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 QSOX1O00391 747 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 NCK2O43639 380 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 IGLV2-14P01704 120 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 HGFP14210 728 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 GPD1P21695 349 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 CTGFP29279 349 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 COPAP53621 1224 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 STK3Q13188 491 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 KCNAB1Q14722 419 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 ARL13BQ3SXY8 428 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 RRAGBQ5VZM2 374 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 FBXO42Q6P3S6 717 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 USP17L6PQ6QN14 398 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 ZNF804AQ7Z570 1209 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 CERS3Q8IU89 383 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 BOLLQ8N9W6 283 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 GJA10Q969M2 543 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 ZBTB45Q96K62 511 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 GDF15Q99988 308 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 ELAC2Q9BQ52 826 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 DPCDQ9BVM2 203 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 R3HDMLQ9H3Y0 253 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 DNAJB11Q9UBS4 358 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 VPS51Q9UID3 782 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 ADAMTS5Q9UNA0 930 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 HPSEQ9Y251 543 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 COX11Q9Y6N1 276 aa6.75□□□□□ -1.33
CCDC88A-206ENST00000430086 ZNF213O14771 459 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 NPSP0C0P6 89 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 ENGP17813 658 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 GKP32189 559 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 MTHFSP49914 203 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 HDAC1Q13547 482 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 PMS2P11Q13670 270 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 CEP85Q6P2H3 762 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 ARHGEF25Q86VW2 580 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 ADGRG3Q86Y34 549 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 FANCBQ8NB91 859 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 ABHD11Q8NFV4 315 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 ZNF384Q8TF68 577 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 NELL1Q92832 810 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 SGCZQ96LD1 299 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 THAP7Q9BT49 309 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 MAGEB5Q9BZ81 275 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 CCNL1Q9UK58 526 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 ADAM21Q9UKJ8 722 aa6.74□□□□□ -1.33
CCDC88A-206ENST00000430086 AGPSO00116 658 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 PMPCBO75439 489 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 IFIT2P09913 472 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 UBE4AQ14139 1066 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 SRLQ86TD4 932 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 KRT73Q86Y46 540 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 FAM186BQ8IYM0 893 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 DEPTORQ8TB45 409 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 CTHRC1Q96CG8 243 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 LRRC46Q96FV0 321 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 HIST1H2AAQ96QV6 131 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 PRR25Q96S07 402 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 AS3MTQ9HBK9 375 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 ZBTB26Q9HCK0 441 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 NLRC4Q9NPP4 1024 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 GJB4Q9NTQ9 266 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 FNIP2Q9P278 1114 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 WNT6Q9Y6F9 365 aa6.73□□□□□ -1.33
CCDC88A-206ENST00000430086 HNRNPCP07910 306 aaKnown RBP eCLIP6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 HARSP12081 509 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 CD19P15391 556 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 SUMO2P61956 95 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 E2F1Q01094 437 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 NHLH1Q02575 133 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 CLCA4Q14CN2 919 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 SLC35G1Q2M3R5 365 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 PCID2Q5JVF3 399 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 SYCP2LQ5T4T6 812 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms