RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 GOLGA5Q8TBA6 731 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 PLEKHO2Q8TD55 490 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 ZC3H10Q96K80 434 aaKnown RBP15.41■□□□□ 0.06
SDC1-204ENST00000429035 TNIP3Q96KP6 325 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 GZF1Q9H116 711 aaPredicted RBP15.41■□□□□ 0.06
SDC1-204ENST00000429035 XYLT2Q9H1B5 865 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 DMAP1Q9NPF5 467 aaPredicted RBP15.41■□□□□ 0.06
SDC1-204ENST00000429035 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.41■□□□□ 0.06
SDC1-204ENST00000429035 GMIPQ9P107 970 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 BCCIPQ9P287 314 aaKnown RBP eCLIP15.41■□□□□ 0.06
SDC1-204ENST00000429035 CGNQ9P2M7 1197 aaKnown RBP15.41■□□□□ 0.06
SDC1-204ENST00000429035 MMP17Q9ULZ9 603 aa15.41■□□□□ 0.06
SDC1-204ENST00000429035 ACACBO00763 2458 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 PVALEFA0A1B0GWK0 134 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 K7EQS6 105 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 KLF8O95600 359 aaPredicted RBP15.4■□□□□ 0.06
SDC1-204ENST00000429035 STAU1O95793 577 aaKnown RBP15.4■□□□□ 0.06
SDC1-204ENST00000429035 CAVIN2O95810 425 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 OLFM2O95897 454 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 CCDC130P13994 396 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 BCKDHBP21953 392 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 PIK3CAP42336 1068 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 SLC6A11P48066 632 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 LIMK1P53667 647 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 DNM1Q05193 864 aaKnown RBP15.4■□□□□ 0.06
SDC1-204ENST00000429035 CEP135Q66GS9 1140 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 CYP2U1Q7Z449 544 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 ALLCQ8N6M5 410 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 TXNDC5Q8NBS9 432 aaKnown RBP15.4■□□□□ 0.06
SDC1-204ENST00000429035 MDGA1Q8NFP4 955 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 SCAMP5Q8TAC9 235 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 JAKMIP2Q96AA8 810 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 SMARCD1Q96GM5 515 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 KCNK16Q96T55 309 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 PNKPQ96T60 521 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 SDCBP2Q9H190 292 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 ARHGEF4Q9NR80 690 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 EBF1Q9UH73 591 aa15.4■□□□□ 0.06
SDC1-204ENST00000429035 MAP1BP46821 2468 aaKnown RBP15.39■□□□□ 0.05
SDC1-204ENST00000429035 COCHO43405 550 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 ALDH1A2O94788 518 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 KAT7O95251 611 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 P4HA1P13674 534 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 DHPSP49366 369 aaPredicted RBP15.39■□□□□ 0.05
SDC1-204ENST00000429035 PKP1Q13835 747 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 KMT5BQ4FZB7 885 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 PLA2G2CQ5R387 149 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 HECTD3Q5T447 861 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 ARMCX6Q7L4S7 300 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 ACOT1Q86TX2 421 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 PGBD3Q8N328 593 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 NAT16Q8N8M0 369 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 KIAA0895Q8NCT3 520 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 SPACA7Q96KW9 195 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 CNOT6LQ96LI5 555 aaKnown RBP15.39■□□□□ 0.05
SDC1-204ENST00000429035 CCSER2Q9H7U1 834 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 FAM49BQ9NUQ9 324 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 HMGXB4Q9UGU5 601 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 CHORDC1Q9UHD1 332 aaPredicted RBP15.39■□□□□ 0.05
SDC1-204ENST00000429035 CEP192Q8TEP8 1941 aa15.39■□□□□ 0.05
SDC1-204ENST00000429035 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.38■□□□□ 0.05
SDC1-204ENST00000429035 FAM163BP0C2L3 166 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 ADORA2BP29275 332 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 AP3M2P53677 418 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 DLG4P78352 724 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 MRPS21P82921 87 aaKnown RBP15.38■□□□□ 0.05
SDC1-204ENST00000429035 MESP2Q0VG99 397 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 STK4Q13043 487 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 CRY1Q16526 586 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 ST3GAL2Q16842 350 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 ANO4Q32M45 955 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 LY6G5CQ5SRR4 150 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 BTBD8Q5XKL5 378 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 PMS2CLQ68D20 193 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 SPOPLQ6IQ16 392 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 C11orf74Q86VG3 221 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 PARD3BQ8TEW8 1205 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 HMGB4Q8WW32 186 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 RLN3Q8WXF3 142 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 OVCA2Q8WZ82 227 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 SNX21Q969T3 373 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 MMRN2Q9H8L6 949 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 POLMQ9NP87 494 aaPredicted RBP15.38■□□□□ 0.05
SDC1-204ENST00000429035 TBC1D14Q9P2M4 693 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 CFAP45Q9UL16 551 aa15.38■□□□□ 0.05
SDC1-204ENST00000429035 TNRC6BQ9UPQ9 1833 aaKnown RBP15.38■□□□□ 0.05
SDC1-204ENST00000429035 PLXND1Q9Y4D7 1925 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 BCLAF3A2AJT9 711 aaKnown RBP15.37■□□□□ 0.05
SDC1-204ENST00000429035 SGK1O00141 431 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 ACTN4O43707 911 aaKnown RBP15.37■□□□□ 0.05
SDC1-204ENST00000429035 KLRC4O43908 158 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 KRT37O76014 449 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 VNN1O95497 513 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 C4BPAP04003 597 aaKnown RBP15.37■□□□□ 0.05
SDC1-204ENST00000429035 NR3C1P04150 777 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 HNRNPLP14866 589 aaKnown RBP eCLIP15.37■□□□□ 0.05
SDC1-204ENST00000429035 PFKFB1P16118 471 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 EIF2DP41214 584 aaKnown RBP15.37■□□□□ 0.05
SDC1-204ENST00000429035 NDST1P52848 882 aa15.37■□□□□ 0.05
SDC1-204ENST00000429035 MAP3K7CLP57077 242 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms