RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 ADAM15Q13444 863 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 MTMR3Q13615 1198 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 SLC18A3Q16572 532 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ATAT1Q5SQI0 421 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 FAM102AQ5T9C2 384 aaPredicted RBP8.9□□□□□ -0.98
TRIM48-201ENST00000417545 BTBD8Q5XKL5 378 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 PMF1Q6P1K2 205 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 DNAJC24Q6P3W2 148 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ALKBH5Q6P6C2 394 aaKnown RBP8.9□□□□□ -0.98
TRIM48-201ENST00000417545 WDR59Q6PJI9 974 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 DNAJB7Q7Z6W7 309 aaPredicted RBP8.9□□□□□ -0.98
TRIM48-201ENST00000417545 TADA2BQ86TJ2 420 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ZDHHC17Q8IUH5 632 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 LRRC8AQ8IWT6 810 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 LEMD2Q8NC56 503 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ZMIZ2Q8NF64 920 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 STK32AQ8WU08 396 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 RNF139Q8WU17 664 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 SLC35F5Q8WV83 523 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 KCTD13Q8WZ19 329 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 MRPS31Q92665 395 aaKnown RBP8.9□□□□□ -0.98
TRIM48-201ENST00000417545 PSMG2Q969U7 264 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 GUCD1Q96NT3 240 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 CHP1Q99653 195 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ULBP1Q9BZM6 244 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ATXN3LQ9H3M9 355 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 TRPC7Q9HCX4 862 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 CNGB3Q9NQW8 809 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 TLR8Q9NR97 1041 aaKnown RBP8.9□□□□□ -0.98
TRIM48-201ENST00000417545 MTMR10Q9NXD2 777 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 WDR35Q9P2L0 1181 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 MYO1AQ9UBC5 1043 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 CD207Q9UJ71 328 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 NAGPAQ9UK23 515 aa8.9□□□□□ -0.98
TRIM48-201ENST00000417545 ZNF638Q14966 1978 aaKnown RBP8.9□□□□□ -0.99
TRIM48-201ENST00000417545 GREB1Q4ZG55 1949 aa8.9□□□□□ -0.99
TRIM48-201ENST00000417545 A0A087X0T9 212 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 DDX3XO00571 662 aaKnown RBP eCLIP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 ARHGAP6O43182 974 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 FTLP02792 175 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 ERBB2P04626 1255 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 CYP1A1P04798 512 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 H2AFZP0C0S5 128 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 USP17L7P0C7H9 530 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 FAM228BP0C875 321 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 MYBL1P10243 752 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 GZMAP12544 262 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 KCNA5P22460 613 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 CDH5P33151 784 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 PPP3CCP48454 512 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 RNASE9P60153 205 aaKnown RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 TAF10Q12962 218 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 PTPN20Q4JDL3 420 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 PKDCCQ504Y2 493 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 EFHC1Q5JVL4 640 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 C10orf76Q5T2E6 689 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 DCUN1D2Q6PH85 259 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 FAM183BPQ6ZVS7 135 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 H2AFVQ71UI9 128 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 GPRIN1Q7Z2K8 1008 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 GRASPQ7Z6J2 395 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 CMASQ8NFW8 434 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 VN1R2Q8NFZ6 395 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 MAFAQ8NHW3 353 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 SCAMP5Q8TAC9 235 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 HLA-CQ95604 372 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 TRMT2BQ96GJ1 504 aaKnown RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 PDLIM2Q96JY6 352 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 CPXM1Q96SM3 734 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 PCDHB18PQ96TA0 734 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 UBE2ZQ9H832 354 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 HCFC1R1Q9NWW0 138 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 GMIPQ9P107 970 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 FAM50BQ9Y247 325 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 MRPS23Q9Y3D9 190 aaKnown RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 EPN1Q9Y6I3 576 aaPredicted RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 SCINQ9Y6U3 715 aa8.89□□□□□ -0.99
TRIM48-201ENST00000417545 LAMA2P24043 3122 aaKnown RBP8.89□□□□□ -0.99
TRIM48-201ENST00000417545 EIF3CLB5ME19 914 aaKnown RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 H3BQ06 376 aaPredicted RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 TBX10O75333 385 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 NDUFA10O95299 355 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 GLP2RO95838 553 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 LTFP02788 710 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 RHOP08100 348 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 UNGP13051 313 aaPredicted RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 MMP8P22894 467 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 MAGEA1P43355 309 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 PSEN1P49768 467 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 NAP1L1P55209 391 aaKnown RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 DAOAP59103 153 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 YWHAGP61981 247 aaKnown RBP eCLIP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 MRPS5P82675 430 aaKnown RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 MMRN1Q13201 1228 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 C2CD6Q53TS8 623 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 TMEM184AQ6ZMB5 413 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 GET4Q7L5D6 327 aaPredicted RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 PHLDB2Q86SQ0 1253 aa8.88□□□□□ -0.99
TRIM48-201ENST00000417545 PHF13Q86YI8 300 aaPredicted RBP8.88□□□□□ -0.99
TRIM48-201ENST00000417545 SCUBE3Q8IX30 993 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms