RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 MINDY3Q9H8M7 445 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PHIPQ8WWQ0 1821 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PITPNM1O00562 1244 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 RNF40O75150 1001 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 CSH1P0DML2 217 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 CSH2P0DML3 217 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 MBL2P11226 248 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 TYMPP19971 482 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 BDNFP23560 247 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 AVPR1AP37288 418 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 GARSP41250 739 aaKnown RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 EIF3EP60228 445 aaKnown RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SLC6A3Q01959 620 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ADIGQ0VDE8 80 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ZNF235Q14590 738 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 E2F5Q15329 346 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 RABGAP1LQ5R372 815 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 NUDCD3Q8IVD9 361 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 VPS52Q8N1B4 723 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 TAB3Q8N5C8 712 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 BAP1Q92560 729 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ATP6V1E2Q96A05 226 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 FAF2Q96CS3 445 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SCLYQ96I15 445 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 CABS1Q96KC9 395 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 FMO2Q99518 471 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 UPF3AQ9H1J1 476 aaKnown RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ADAM28Q9UKQ2 775 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PHF24Q9UPV7 400 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 FER1L6Q2WGJ9 1857 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 AP3B1O00203 1094 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SEC31AO94979 1220 aaKnown RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 MKRN4PQ13434 485 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 TTC31Q49AM3 519 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 MICALL1Q8N3F8 863 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SPATA4Q8NEY3 305 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 FAM172AQ8WUF8 416 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SERPINB11Q96P15 392 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PI4K2BG5E9Z4 385 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 HNRNPCP07910 306 aaKnown RBP eCLIP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ARL4CP56559 192 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 COPS2P61201 443 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 GNGT1P63211 74 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 MOGSQ13724 837 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 CCDC137Q6PK04 289 aaKnown RBP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 VSTM1Q6UX27 236 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 C4orf22Q6V702 233 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SLFN11Q7Z7L1 901 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SPATA18Q8TC71 538 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PGLYRP2Q96PD5 576 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ZSWIM1Q9BR11 485 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SLC28A3Q9HAS3 691 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SYTL2Q9HCH5 934 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 RNF19AQ9NV58 838 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 MBLAC1A4D2B0 266 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PSMD3O43242 534 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 KCNE1P15382 129 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PPARGP37231 505 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ETFBP38117 255 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 AP1B1Q10567 949 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 NR1H3Q13133 447 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PDCLQ13371 301 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 DENND5BQ6ZUT9 1274 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SEMA4DQ92854 862 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SPDL1Q96EA4 605 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 FAM129AQ9BZQ8 928 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 RASSF4Q9H2L5 321 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PCDHB8Q9UN66 801 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ADGRA2Q96PE1 1338 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SCN4AP35499 1836 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SSC5DA1L4H1 1573 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PJA2O43164 708 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 LTFP02788 710 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 CCR1P32246 355 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 PBX1P40424 430 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 BRCC3P46736 316 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 CLNS1AP54105 237 aaKnown RBP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 LILRA4P59901 499 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 DMTNQ08495 405 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 MIB1Q86YT6 1006 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ATPAF2Q8N5M1 289 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 IRX2Q9BZI1 471 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 SLC12A8A0AV02 714 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 F5H5T6 163 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 CCDC130P13994 396 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 EPHB2P29323 1055 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 GCKP35557 465 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ARL1P40616 181 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ST8SIA6P61647 398 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 CENPCQ03188 943 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 EFEMP1Q12805 493 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 MMGT1Q8N4V1 131 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 FSD1LQ9BXM9 530 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 MAGEB5Q9BZ81 275 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 LHX5Q9H2C1 402 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 POPDC2Q9HBU9 364 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 ABCC13Q9NSE7 274 aa8.87□□□□□ -0.99
SYNE1-211ENST00000413186 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.87□□□□□ -0.99
SYNE1-211ENST00000413186 KAT6AQ92794 2004 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms