RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 AQP5P55064 265 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 CBX3Q13185 183 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF211Q13398 564 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-206ENST00000409809 USP10Q14694 798 aaKnown RBP13.31□□□□□ -0.28
COL6A3-206ENST00000409809 CDO1Q16878 200 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 XKRXQ6PP77 449 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 RASSF6Q6ZTQ3 369 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 PEX5LQ8IYB4 626 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 CLHC1Q8NHS4 586 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 C11orf70Q9BRQ4 267 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 ANO3Q9BYT9 981 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 CYP19A1P11511 503 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-206ENST00000409809 DEPDC4Q8N2C3 294 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 GALNT15Q8N3T1 639 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 CCDC185Q8N715 623 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 C18orf8Q96DM3 657 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 SLC25A23Q9BV35 468 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 NXF1Q9UBU9 619 aaKnown RBP13.31□□□□□ -0.28
COL6A3-206ENST00000409809 MLXQ9UH92 298 aa13.31□□□□□ -0.28
COL6A3-206ENST00000409809 NLRP1Q9C000 1473 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 M0R2C6 588 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 HOXB8P17481 243 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 TOB2Q14106 344 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 FRG1Q14331 258 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ALX1Q15699 326 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 NEDD1Q8NHV4 660 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CSE1LP55060 971 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 TBCELQ5QJ74 424 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 SLC26A11Q86WA9 606 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 RTKN2Q8IZC4 609 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 SLC30A5Q8TAD4 765 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CASKIN2Q8WXE0 1202 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 RNF25Q96BH1 459 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 TUBGCP5Q96RT8 1024 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 C3orf18Q9UK00 162 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 RPL22P35268 128 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 DPYDQ12882 1025 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ABCB5Q2M3G0 1257 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 TFDP3Q5H9I0 405 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 MDH1BQ5I0G3 518 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 RNF219Q5W0B1 726 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 MS4A14Q96JA4 679 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 EPB41L4BQ9H329 900 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ITSN1Q15811 1721 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ARPC4-TTLL3A0A0A6YYG9 625 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 MAGEB2O15479 319 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ASS1P00966 412 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 MPOP05164 745 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 UCHL3P15374 230 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 KCNA6P17658 529 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 EIF4A1P60842 406 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 MAPK11Q15759 364 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 MAPK6Q16659 721 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 METTL16Q86W50 562 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 EGFL6Q8IUX8 553 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CPXCR1Q8N123 301 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 TRPV1Q8NER1 839 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CORO2BQ9UQ03 480 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 PCDHGA10Q9Y5H3 936 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 A0A0G2JPF8 293 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 HNRNPCL3B7ZW38 293 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 HNRNPCL4P0DMR1 293 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 POU4F1Q01851 419 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 FAM102AQ5T9C2 384 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 PACS1Q6VY07 963 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 PHKA2P46019 1235 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 PDK3Q15120 406 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 DUOXA2Q1HG44 320 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CAMKK2Q96RR4 588 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 THUMPD3Q9BV44 507 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 CHD1O14646 1710 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 GZMAP12544 262 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 TCN1P20061 433 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 RBM43Q6ZSC3 357 aaKnown RBP13.3□□□□□ -0.28
COL6A3-206ENST00000409809 GLYCTKQ8IVS8 523 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ZSWIM1Q9BR11 485 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 DCUN1D5Q9BTE7 237 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 ENTPD7Q9NQZ7 604 aa13.3□□□□□ -0.28
COL6A3-206ENST00000409809 M0QX08 132 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 KPNA3O00505 521 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 FAM20BO75063 409 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 SERPINE1P05121 402 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 CD58P19256 250 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 GTF2H1P32780 548 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PRELPP51888 382 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PTENP60484 403 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 MAP2K7O14733 419 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 IFNA16P05015 189 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 C15orf59Q2T9L4 293 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-206ENST00000409809 NEK5Q6P3R8 708 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 APOPT1Q96IL0 206 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PCDHB2Q9Y5E7 798 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 A0A0X1KG70 313 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 TMEM114B3SHH9 223 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 DHFRP00374 187 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 ATP6V1B2P21281 511 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 PPP2R1BP30154 601 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 GALCP54803 685 aa13.29□□□□□ -0.28
COL6A3-206ENST00000409809 TCIRG1Q13488 830 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms