RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 C2CD6Q53TS8 623 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 EFHC1Q5JVL4 640 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 ZNF569Q5MCW4 686 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 RNF19BQ6ZMZ0 732 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 PHLDB2Q86SQ0 1253 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 ATAD1Q8NBU5 361 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 ZNF461Q8TAF7 563 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 FEZF2Q8TBJ5 459 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 SPPL3Q8TCT6 385 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 AUTS2Q8WXX7 1259 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 ARNTL2Q8WYA1 636 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 ARHGEF26Q96DR7 871 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 C8orf48Q96LL4 319 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 SMOQ99835 787 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 CLSTN3Q9BQT9 956 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 TRIM62Q9BVG3 475 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 FBXO44Q9H4M3 255 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 CYP4F11Q9HBI6 524 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 RXFP1Q9HBX9 757 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 CSNK1G1Q9HCP0 422 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 HSFX1Q9UBD0 423 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 CYTH4Q9UIA0 394 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 ANAPC7Q9UJX3 599 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 TSC2P49815 1807 aa14.94□□□□□ -0.02
SKA1-202ENST00000398452 PRRC2BQ5JSZ5 2229 aaKnown RBP14.93□□□□□ -0.02
SKA1-202ENST00000398452 WDR27A2RRH5 827 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 TMEM110-MUSTN1A8MSY1 372 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 PIK3R2O00459 728 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 ARHGEF15O94989 841 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 RTN3O95197 1032 aaPredicted RBP14.93□□□□□ -0.02
SKA1-202ENST00000398452 LINC00271P0C7V0 271 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 HAPLN1P10915 354 aaPredicted RBP14.93□□□□□ -0.02
SKA1-202ENST00000398452 GSCP56915 257 aaPredicted RBP14.93□□□□□ -0.02
SKA1-202ENST00000398452 SLC6A3Q01959 620 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 IFRD2Q12894 506 aaPredicted RBP14.93□□□□□ -0.02
SKA1-202ENST00000398452 DUSP4Q13115 394 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 PLEKHA7Q6IQ23 1121 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 DAAM2Q86T65 1068 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 XYLT1Q86Y38 959 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 NUP93Q8N1F7 819 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 PPP2R3CQ969Q6 453 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 FAM149B1Q96BN6 582 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 CEP295NLQ96MC4 621 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 MCEEQ96PE7 176 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 KCNK16Q96T55 309 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 RHOBTB2Q9BYZ6 727 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 LMAN2LQ9H0V9 348 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 CNGB3Q9NQW8 809 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 TRIM10Q9UDY6 481 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 IP6K2Q9UHH9 426 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 DPP7Q9UHL4 492 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 DUSP10Q9Y6W6 482 aa14.93□□□□□ -0.02
SKA1-202ENST00000398452 SIGLEC16A6NMB1 481 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 H3BNC9 293 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 TULP2O00295 520 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 CAPN9O14815 690 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 TEX28O15482 410 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 BEST1O76090 585 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 TNNT1P13805 278 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 ATF2P15336 505 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 CASQ1P31415 396 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 SCNN1AP37088 669 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 RNASE9P60153 205 aaKnown RBP14.92□□□□□ -0.02
SKA1-202ENST00000398452 PTP4A2Q12974 167 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 MAMLD1Q13495 774 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 TCEAL1Q15170 157 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 PTPROQ16827 1216 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 RSPO2Q6UXX9 243 aaPredicted RBP14.92□□□□□ -0.02
SKA1-202ENST00000398452 CCDC149Q6ZUS6 474 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 DENND5BQ6ZUT9 1274 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 FAM183BPQ6ZVS7 135 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 SPRED2Q7Z698 418 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 SCUBE3Q8IX30 993 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 ARHGAP18Q8N392 663 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.92□□□□□ -0.02
SKA1-202ENST00000398452 UBE2Q2Q8WVN8 375 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 ZNF592Q92610 1267 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 KLHL5Q96PQ7 755 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 OSGEPQ9NPF4 335 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 METTL5Q9NRN9 209 aaKnown RBP14.92□□□□□ -0.02
SKA1-202ENST00000398452 COMMD8Q9NX08 183 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 SLC27A5Q9Y2P5 690 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 IRAK3Q9Y616 596 aa14.92□□□□□ -0.02
SKA1-202ENST00000398452 A0A0U1RQJ8 604 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 EPOPA6NHQ4 379 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 GRM6O15303 877 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 SPOPO43791 374 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 MTA2O94776 668 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 ABLIM3O94929 683 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 ZBED1O96006 694 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 GLUD1P00367 558 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 LRG1P02750 347 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 CNPP09543 421 aaKnown RBP14.91□□□□□ -0.02
SKA1-202ENST00000398452 SLC5A3P53794 718 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 HADHBP55084 474 aaKnown RBP14.91□□□□□ -0.02
SKA1-202ENST00000398452 ETF1P62495 437 aaKnown RBP14.91□□□□□ -0.02
SKA1-202ENST00000398452 MRPS5P82675 430 aaKnown RBP14.91□□□□□ -0.02
SKA1-202ENST00000398452 MESDQ14696 234 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 DDR2Q16832 855 aa14.91□□□□□ -0.02
SKA1-202ENST00000398452 TJAP1Q5JTD0 557 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms