RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NAT16Q8N8M0 369 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 SMG7Q92540 1137 aaKnown RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 ZNF333Q96JL9 665 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 NAP1L3Q99457 506 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CEP41Q9BYV8 373 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 EHD2Q9NZN4 543 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 C2CD2Q9Y426 696 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 MCF2LO15068 1137 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 KRT10P13645 584 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 HOXD13P35453 343 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 FAAP100Q0VG06 881 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 C15orf59Q2T9L4 293 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 C16orf59Q7L2K0 433 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 RHOT2Q8IXI1 618 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CCDC63Q8NA47 563 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 KLHL23Q8NBE8 558 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 POF1BQ8WVV4 589 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 ZNF516Q92618 1163 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 OSBPL9Q96SU4 736 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 DMAP1Q9NPF5 467 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 CXXC1Q9P0U4 656 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-205ENST00000392004 SFMBT1Q9UHJ3 866 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 DSEQ9UL01 958 aa10.76□□□□□ -0.69
COL6A3-205ENST00000392004 P4HA2O15460 535 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ASS1P00966 412 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 NR1D1P20393 614 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 COMTP21964 271 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 NRIP1P48552 1158 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 GSCP56915 257 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ARHGAP15Q53QZ3 475 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 MIIPQ5JXC2 388 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 RARS2Q5T160 578 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 CELF6Q96J87 481 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 SH3GL2Q99962 352 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 TACO1Q9BSH4 297 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 EPN3Q9H201 632 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ABHD14A-ACY1A0A1B0GW23 586 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 H0Y626 953 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 NBNO60934 754 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 CYBBP04839 570 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 EZRP15311 586 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 LAG3P18627 525 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 HOXA11P31270 313 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ATICP31939 592 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 HPDP32754 393 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 GUCY2DQ02846 1103 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 SOX4Q06945 474 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 POM121L1PQ3SYA9 428 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ANKS3Q6ZW76 656 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 DEFB106AQ8N104 65 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 FAM172AQ8WUF8 416 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 HDAC7Q8WUI4 952 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 SNX27Q96L92 541 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 KREMEN1Q96MU8 473 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ADAM33Q9BZ11 813 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 NRDE2Q9H7Z3 1164 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 APOBEC3GQ9HC16 384 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 SUFUQ9UMX1 484 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 GPR32O75388 356 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ITGB1P05556 798 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 LSP1P33241 339 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 PPM1AP35813 382 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 CDH18Q13634 790 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 TCEA2Q15560 299 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 GLE1Q53GS7 698 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 WDR59Q6PJI9 974 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 CARNMT1Q8N4J0 409 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 PLEKHO2Q8TD55 490 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 CFAP57Q96MR6 1250 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ZIM3Q96PE6 472 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 VPS37BQ9H9H4 285 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 DONSONQ9NYP3 566 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 UTP11Q9Y3A2 253 aaKnown RBP10.75□□□□□ -0.69
COL6A3-205ENST00000392004 ASXL3Q9C0F0 2248 aa10.75□□□□□ -0.69
COL6A3-205ENST00000392004 H3BQ06 376 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 FGF18O76093 207 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 FSBPO95073 299 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 EDN1P05305 212 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 NNMTP40261 264 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 KCNJ1P48048 391 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 WNT7BP56706 349 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 ITIH3Q06033 890 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 BST2Q10589 180 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 HIC1Q14526 733 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 SCAMP5Q8TAC9 235 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 RFFLQ8WZ73 363 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 SMARCD1Q96GM5 515 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 DDX47Q9H0S4 455 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 NKX2-4Q9H2Z4 354 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 ADAMTS10Q9H324 1103 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PRDM12Q9H4Q4 367 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 PTPRJQ12913 1337 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 MYH8P13535 1937 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 GRIN2DO15399 1336 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 ESYT3A0FGR9 886 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 MSI1O43347 362 aaKnown RBP10.74□□□□□ -0.69
COL6A3-205ENST00000392004 GUCY1A3Q02108 690 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 MTMR3Q13615 1198 aa10.74□□□□□ -0.69
COL6A3-205ENST00000392004 MEA1Q16626 185 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms