RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 LRRC14BA6NHZ5 514 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 H3BN98 237 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 OR6B1O95007 311 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 CD4P01730 458 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 P4HBP07237 508 aaKnown RBP12□□□□□ -0.49
VPS13A-205ENST00000376636 TCF4P15884 667 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 TMEM132DQ14C87 1099 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 DDI2Q5TDH0 399 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 CHID1Q9BWS9 393 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 RXFP1Q9HBX9 757 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 WDR72Q3MJ13 1102 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 RASGRP2Q7LDG7 609 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 AHSPQ9NZD4 102 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 BBOX1O75936 387 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 IL18RAPO95256 599 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 KCNB1Q14721 858 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 EZH2Q15910 746 aaKnown RBP12□□□□□ -0.49
VPS13A-205ENST00000376636 MROH9Q5TGP6 573 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 OLFML1Q6UWY5 402 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF605Q86T29 641 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 IPMKQ8NFU5 416 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 ERP44Q9BS26 406 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 ETAA1Q9NY74 926 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 PDXKO00764 312 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 PTPN1P18031 435 aaKnown RBP12□□□□□ -0.49
VPS13A-205ENST00000376636 CDK8P49336 464 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 MS4A14Q96JA4 679 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 AAR2Q9Y312 384 aaKnown RBP12□□□□□ -0.49
VPS13A-205ENST00000376636 USP17L3A6NCW0 530 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 USP17L4A6NCW7 530 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 CBFA2T3O75081 653 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 PTGISQ16647 500 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 USP17L1Q7RTZ2 530 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 EMILIN2Q9BXX0 1053 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 SSU72P8A0A1W2PR75 194 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 SMCO3A2RU48 225 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 POTECB2RU33 542 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 MYL4P12829 197 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 RBP5P82980 135 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 EFHC1Q5JVL4 640 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 IRAK1BP1Q5VVH5 260 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 PYHIN1Q6K0P9 492 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 SAMD3Q8N6K7 520 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 KYQ8NBH2 561 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 EHD3Q9NZN3 535 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 PHTF1Q9UMS5 762 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 GRIN2AQ12879 1464 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 KHDRBS3O75525 346 aaKnown RBP12□□□□□ -0.49
VPS13A-205ENST00000376636 TMEM63BQ5T3F8 832 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 NLGN1Q8N2Q7 840 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 FNIP1Q8TF40 1166 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 GREM2Q9H772 168 aa12□□□□□ -0.49
VPS13A-205ENST00000376636 JPH1Q9HDC5 661 aaPredicted RBP12□□□□□ -0.49
VPS13A-205ENST00000376636 NR5A2O00482 541 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 HOXD10P28358 340 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 NFIAQ12857 509 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 S100ZQ8WXG8 99 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ISCUQ9H1K1 167 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 RMI1Q9H9A7 625 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CYLDQ9NQC7 956 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ABT1Q9ULW3 272 aaKnown RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 SNX8Q9Y5X2 465 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 AP3D1O14617 1153 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 PDGFRAP16234 1089 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CYP24A1Q07973 514 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 KDM7AQ6ZMT4 941 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF589Q86UQ0 364 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 COL23A1Q86Y22 540 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 PCSK1P29120 753 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 HSF2Q03933 536 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ZNF512Q96ME7 567 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ENO2P09104 434 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 WDR60Q8WVS4 1066 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 NR3C2P08235 984 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 FGRP09769 529 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 FOXP4Q8IVH2 680 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 SLC44A2Q8IWA5 706 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 DNAJC10Q8IXB1 793 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CAPSLQ8WWF8 208 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 FRMD6Q96NE9 622 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 KCTD10Q9H3F6 313 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ADORA1P30542 326 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 RAB25P57735 213 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 TAF13Q15543 124 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 POTEGQ6S5H5 508 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 RPTNQ6XPR3 784 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 PROSER1Q86XN7 944 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 B3GALT6Q96L58 329 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 CCDC3Q9BQI4 270 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 ARF4P18085 180 aaPredicted RBP11.99□□□□□ -0.49
VPS13A-205ENST00000376636 DNAJC3Q13217 504 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 TMEM237Q96Q45 408 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 NLNQ9BYT8 704 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 MCM8Q9UJA3 840 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 PRRG1O14668 218 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 RBP1P09455 135 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 DSG3P32926 999 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 RASA2Q15283 850 aa11.99□□□□□ -0.49
VPS13A-205ENST00000376636 MYO1HQ8N1T3 1032 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms