RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 VSTM4Q8IW00 320 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 CCAR2Q8N163 923 aaKnown RBP5.34□□□□□ -1.55
USP48-202ENST00000374730 CNBD1Q8NA66 436 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 CCDC112Q8NEF3 446 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 SMARCE1Q969G3 411 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 ACAP3Q96P50 834 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 PSMD1Q99460 953 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 TTC1Q99614 292 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 PYM1Q9BRP8 204 aaKnown RBP5.34□□□□□ -1.55
USP48-202ENST00000374730 LSM14BQ9BX40 385 aaKnown RBP5.34□□□□□ -1.55
USP48-202ENST00000374730 KCTD10Q9H3F6 313 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 SH3GLB2Q9NR46 395 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 TCP11L1Q9NUJ3 509 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 FZD1Q9UP38 647 aa5.34□□□□□ -1.55
USP48-202ENST00000374730 MYH4Q9Y623 1939 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 ZNF646O15015 1829 aaPredicted RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 TMEM191CA6NGB0 347 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 TSPY2A6NKD2 308 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 FOXN1O15353 648 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 PRDM1O75626 825 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 RECQL4O94761 1208 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 S100BP04271 92 aaPredicted RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 VIL1P09327 827 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 CYP2D6P10635 497 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 ATP1A3P13637 1013 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 IL1R1P14778 569 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 PLCD1P51178 756 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 UBASH3AP57075 661 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 INHBEP58166 350 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 FSCN1Q16658 493 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 EARS2Q5JPH6 523 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 ARL6IP4Q66PJ3 421 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 GALNT17Q6IS24 598 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 PRR5LQ6MZQ0 368 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 ARMCX5Q6P1M9 558 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 PCSK4Q6UW60 755 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 Q6ZPA2 131 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 LRRC55Q6ZSA7 311 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 GPRIN1Q7Z2K8 1008 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 AMOTL1Q8IY63 956 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 SRBD1Q8N5C6 995 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 SNX33Q8WV41 574 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 ANKRD7Q92527 254 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 C16orf45Q96MC5 204 aaPredicted RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 LZTS2Q9BRK4 669 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 RTFDC1Q9BY42 306 aaPredicted RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 CPEB1Q9BZB8 566 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 PRDM12Q9H4Q4 367 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 GEMIN8Q9NWZ8 242 aaKnown RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 SORCS3Q9UPU3 1222 aa5.33□□□□□ -1.56
USP48-202ENST00000374730 COL11A2P13942 1736 aaPredicted RBP5.33□□□□□ -1.56
USP48-202ENST00000374730 ARFGEF1Q9Y6D6 1849 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 RGPD3A6NKT7 1758 aaPredicted RBP5.32□□□□□ -1.56
USP48-202ENST00000374730 RGPD4Q7Z3J3 1758 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 PLIN4Q96Q06 1357 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 GAKO14976 1311 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 FAM205AQ6ZU69 1335 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SYNRGQ9UMZ2 1314 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 GPR75-ASB3A0A0A6YYF3 556 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 CCDC194A0A1B0GVG4 234 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 USP27XA6NNY8 438 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 NEMP1O14524 444 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 TPD52L2O43399 206 aaKnown RBP5.32□□□□□ -1.56
USP48-202ENST00000374730 NMT2O60551 498 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 PRAMEF4O60810 478 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SERPINC1P01008 464 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 GASTP01350 101 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 ITGB1P05556 798 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 HMGB2P26583 209 aaKnown RBP5.32□□□□□ -1.56
USP48-202ENST00000374730 SMARCA1P28370 1054 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SOX5P35711 763 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 NOVP48745 357 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 NLRP5P59047 1200 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 AMPD3Q01432 767 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 TFAP4Q01664 338 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 TBX2Q13207 712 aaPredicted RBP5.32□□□□□ -1.56
USP48-202ENST00000374730 PDCD1Q15116 288 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 PTPN14Q15678 1187 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SMN1Q16637 294 aaKnown RBP5.32□□□□□ -1.56
USP48-202ENST00000374730 FAM47AQ5JRC9 791 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SPECC1Q5M775 1068 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 USP49Q70CQ1 688 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SMIM5Q71RC9 77 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 CLRN3Q8NCR9 226 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 CCDC148Q8NFR7 591 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 CPT1CQ8TCG5 803 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 DPF2Q92785 391 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 PPP1R13BQ96KQ4 1090 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 GSDMAQ96QA5 445 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 NDC1Q9BTX1 674 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 SLC46A2Q9BY10 475 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 KCNH6Q9H252 994 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 KAT14Q9H8E8 782 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 CAAP1Q9H8G2 361 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 ZNF287Q9HBT7 754 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 IL17RBQ9NRM6 502 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 TOPORSQ9NS56 1045 aaPredicted RBP5.32□□□□□ -1.56
USP48-202ENST00000374730 INTS13Q9NVM9 706 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 MCM9Q9NXL9 1143 aa5.32□□□□□ -1.56
USP48-202ENST00000374730 NFE2L3Q9Y4A8 694 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms