RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 MBTPS1Q14703 1052 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 TMEM132DQ14C87 1099 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 EXOC3L1Q86VI1 746 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 RIBC1Q8N443 379 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 TMCO5AQ8N6Q1 288 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ZMAT2Q96NC0 199 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 TRIM51Q9BSJ1 452 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 RNPEPL1Q9HAU8 725 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 C1orf112Q9NSG2 853 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 HES2Q9Y543 173 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF623O75123 536 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 PEX11AO75192 247 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 RECQL4O94761 1208 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 STK10O94804 968 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ITGA4P13612 1032 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ACO1P21399 889 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 CD52P31358 61 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 YARSP54577 528 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 NOP14P78316 857 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 PTK2Q05397 1052 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 KLHL30Q0D2K2 578 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 SLC39A5Q6ZMH5 540 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ZNF571Q7Z3V5 609 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 MAP7D3Q8IWC1 876 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 PPM1KQ8N3J5 372 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ANKLE1Q8NAG6 615 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 C17orf50Q8WW18 174 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 SCG3Q8WXD2 468 aaKnown RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 MPP4Q96JB8 637 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 TRIM7Q9C029 511 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 RAB17Q9H0T7 212 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 RNF39Q9H2S5 420 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 DMAP1Q9NPF5 467 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 FAM105AQ9NUU6 356 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ITGA11Q9UKX5 1188 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 DOLKQ9UPQ8 538 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 NUB1Q9Y5A7 615 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 PCDHB2Q9Y5E7 798 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 HEY1Q9Y5J3 304 aa10.58□□□□□ -0.72
SYNE1-203ENST00000354674 ANO9A1A5B4 782 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 MGEA5O60502 916 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 ALADP13716 330 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 GNAZP19086 355 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 ATICP31939 592 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 NEK3P51956 506 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 KIF11P52732 1056 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 MYL6P60660 151 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 SFSWAPQ12872 951 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 TWF2Q6IBS0 349 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 CCDC25Q86WR0 208 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 TOX2Q96NM4 488 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 ADAM33Q9BZ11 813 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 TUBGCP4Q9UGJ1 667 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 LRRC42Q9Y546 428 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 PITPNM1O00562 1244 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 TTI1O43156 1089 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 CBX6O95503 412 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 MYCP01106 439 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 HSPA1AP0DMV8 641 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 HSPA1BP0DMV9 641 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 TBXAS1P24557 533 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 CUL2Q13617 745 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 GPNMBQ14956 572 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 ARHGAP44Q17R89 818 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 SPOPLQ6IQ16 392 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 RFWD3Q6PCD5 774 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 CAPN12Q6ZSI9 719 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 SLC30A5Q8TAD4 765 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 STK32AQ8WU08 396 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 NR1H4Q96RI1 486 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 CYTH2Q99418 400 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 PLVAPQ9BX97 442 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 OPHN1O60890 802 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 SELPP16109 830 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 AKAP5P24588 427 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 HOXD11P31277 338 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 VPS41P49754 854 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 NFX1Q12986 1120 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 BFSP2Q13515 415 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 SLC18A3Q16572 532 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 PPP1R2P3Q6NXS1 205 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 EPS8L3Q8TE67 593 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 ELMO3Q96BJ8 720 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 KIF12Q96FN5 646 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 DPP3Q9NY33 737 aa10.57□□□□□ -0.72
SYNE1-203ENST00000354674 RBMX2Q9Y388 322 aaKnown RBP10.57□□□□□ -0.72
SYNE1-203ENST00000354674 ATP8B3O60423 1300 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 UMODL1Q5DID0 1318 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 TANC1Q9C0D5 1861 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 A0A0U1RQF3 1178 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 SMIM28A0A1B0GU29 152 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 RGS16O15492 202 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 CYP3A5P20815 502 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 HSPA9P38646 679 aaKnown RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 TRPC3Q13507 836 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 KHDC1Q4VXA5 237 aaKnown RBP10.56□□□□□ -0.72
SYNE1-203ENST00000354674 SCUBE1Q8IWY4 988 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 FAM13CQ8NE31 585 aa10.56□□□□□ -0.72
SYNE1-203ENST00000354674 WDR60Q8WVS4 1066 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms