RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SLFN11Q7Z7L1 901 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PLD3Q8IV08 490 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 LPAR1Q92633 364 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 IFT43Q96FT9 208 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SRPK1Q96SB4 655 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NUDT12Q9BQG2 462 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ZNF341Q9BYN7 854 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SALL4Q9UJQ4 1053 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 KLHL41O60662 606 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 IL18RAPO95256 599 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 C21orf59P57076 290 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 IMPG1Q17R60 797 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 FAM13CQ8NE31 585 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RNF217Q8TC41 542 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ARHGEF1Q92888 912 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NIF3L1Q9GZT8 377 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CLUHO75153 1309 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NOL4O94818 638 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SLITRK3O94933 977 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PROCP04070 461 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 EIF2S1P05198 315 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ACADSBP45954 432 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PTK2BQ14289 1009 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SLC25A41Q8N5S1 370 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 GMCL1P1Q8NEA9 526 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RMDN1Q96DB5 314 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RMND5BQ96G75 393 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ASPSCR1Q9BZE9 553 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CHST7Q9NS84 486 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ASTN1O14525 1302 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CLRN2A0PK11 232 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 BIRC5O15392 142 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ALDH1A3P47895 512 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PLOD1Q02809 727 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PDK3Q15120 406 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NAPEPLDQ6IQ20 393 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 XRRA1Q6P2D8 792 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ERO1BQ86YB8 467 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TBC1D16Q8TBP0 767 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TNIP3Q96KP6 325 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NRDE2Q9H7Z3 1164 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 GOLGA8TH3BQL2 631 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 EIF4BP23588 611 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ADRA1DP25100 572 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RAB15P59190 212 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CAPRIN1Q14444 709 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NFIL3Q16649 462 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RIPOR1Q6ZS17 1223 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TRABD2AQ86V40 505 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TNFRSF25Q93038 417 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PAIP1Q9H074 479 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 GPAMQ9HCL2 828 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 DDX28Q9NUL7 540 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 DNAJC16Q9Y2G8 782 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CYP1A2P05177 515 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RAG1P15918 1043 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 KCNT1Q5JUK3 1230 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RWDD4Q6NW29 188 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 EFL1Q7Z2Z2 1120 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 DNAAF5Q86Y56 855 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ULK2Q8IYT8 1036 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RTKN2Q8IZC4 609 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 BEST2Q8NFU1 509 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PI4K2AQ9BTU6 479 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 FETUBQ9UGM5 382 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RSL24D1Q9UHA3 163 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 TMEM59LQ9UK28 342 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RAB26Q9ULW5 256 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NRXN3Q9Y4C0 1643 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 FAM237BA0A1B0GVD1 139 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 APOC4-APOC2K7ER74 178 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 APOC2P02655 101 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CYP2C8P10632 490 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ATXN3P54252 364 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 GPSM2P81274 684 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RNF220Q5VTB9 566 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 BRINP3Q76B58 766 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 OTOAQ7RTW8 1153 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SAMD3Q8N6K7 520 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 PYDC1Q8WXC3 89 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 DACT3Q96B18 629 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 WNK4Q96J92 1243 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 AK5Q9Y6K8 562 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 E5RI56 91 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 FANCGO15287 622 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CHADO15335 359 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 HSD17B4P51659 736 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CASP5P51878 434 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 SLC18A1P54219 525 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 JAM2P57087 298 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 COG2Q14746 738 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 HORMAD1Q86X24 394 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ARHGEF19Q8IW93 802 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ALLCQ8N6M5 410 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 ZFAND2BQ8WV99 257 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 CPNE1Q99829 537 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 NT5C1AQ9BXI3 368 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RABGEF1Q9UJ41 708 aa4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RUVBL2Q9Y230 463 aaKnown RBP4.95□□□□□ -1.62
CSMD3-203ENST00000343508 RPS6KL1Q9Y6S9 549 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms