RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 EBF2Q9HAK2 575 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 ARHGEF3Q9NR81 526 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 NRBP2Q9NSY0 501 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 TXLNGQ9NUQ3 528 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 KLHL14Q9P2G3 628 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 MCM8Q9UJA3 840 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 FARP1Q9Y4F1 1045 aaPredicted RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 CEP83Q9Y592 693 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 NUB1Q9Y5A7 615 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 PTPRJQ12913 1337 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 TRIP12Q14669 1992 aaPredicted RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 IGKV6-21A0A0C4DH24 114 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 ABHD14A-ACY1A0A1B0GW23 586 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 C17orf102A2RUQ5 167 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SMIM23A6NLE4 172 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 TCP11X1B4DZS4 312 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 NOP56O00567 594 aaKnown RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 OGTO15294 1046 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 MED7O43513 233 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 TLL1O43897 1013 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SPAG6O75602 509 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 UBOX5O94941 541 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 ZWINTO95229 277 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 KRT1P04264 644 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SMIM10L2AP0DMW4 78 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SMIM10L2BP0DMW5 78 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 POU3F3P20264 500 aaPredicted RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 TAC1P20366 129 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 ATP4AP20648 1035 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 PROZP22891 400 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 PHBP35232 272 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 CDKN2BP42772 138 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SNX1Q13596 522 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SPARCL1Q14515 664 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 MXD4Q14582 209 aaPredicted RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 PDK4Q16654 411 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 P3H1Q32P28 736 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 MTERF2Q49AM1 385 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 NUGGCQ68CJ6 796 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 DNAJC24Q6P3W2 148 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 BBS12Q6ZW61 710 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SPRED2Q7Z698 418 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 TMCO2Q7Z6W1 182 aaPredicted RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 FAM228AQ86W67 206 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 TTC39CQ8N584 583 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 INPP5DQ92835 1189 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 APBB2Q92870 758 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 ASB2Q96Q27 587 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 TMEM237Q96Q45 408 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 GPR20Q99678 358 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 HAPLN2Q9GZV7 340 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 VRTNQ9H8Y1 702 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 NOD2Q9HC29 1040 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 FGFR1OP2Q9NVK5 253 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 PSMC3IPQ9P2W1 217 aaPredicted RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 CHORDC1Q9UHD1 332 aaPredicted RBP11.29□□□□□ -0.6
RTN3-201ENST00000338850 TELO2Q9Y4R8 837 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 MTCH2Q9Y6C9 303 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 TRANK1O15050 2925 aa11.29□□□□□ -0.6
RTN3-201ENST00000338850 SPTBN5Q9NRC6 3674 aaKnown RBP11.28□□□□□ -0.6
RTN3-201ENST00000338850 EXOC1LA0A1B0GW35 172 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 LCHNA4D1U4 455 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 SIGLEC16A6NMB1 481 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 ZNF487B1APH4 448 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 RASA4BC9J798 803 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 TRAFD1O14545 582 aaPredicted RBP11.28□□□□□ -0.6
RTN3-201ENST00000338850 ABLIM1O14639 778 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 TM9SF1O15321 606 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 RASA4O43374 803 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 EFCAB14O75071 495 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 LGR5O75473 907 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 DCTN3O75935 186 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 UNC5CO95185 931 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 IL18RAPO95256 599 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 CCND1P24385 295 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 GCAP28676 217 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 THPOP40225 353 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 SLC26A2P50443 739 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 CCNG1P51959 295 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 WNT7BP56706 349 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 RNASELQ05823 741 aaKnown RBP11.28□□□□□ -0.6
RTN3-201ENST00000338850 POU5F1BQ06416 359 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 ZNF252P-AS1Q0IIN9 211 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 CAPSQ13938 189 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 KLHL38Q2WGJ6 581 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 TRIM50Q86XT4 487 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 ATP11CQ8NB49 1132 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 ARNTL2Q8WYA1 636 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 PRCCQ92733 491 aaPredicted RBP11.28□□□□□ -0.6
RTN3-201ENST00000338850 RAB3IPQ96QF0 476 aaPredicted RBP11.28□□□□□ -0.6
RTN3-201ENST00000338850 SH2D3AQ9BRG2 576 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 NFKBIZQ9BYH8 718 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 MIS12Q9H081 205 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 RNPEPQ9H4A4 650 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 ABCF3Q9NUQ8 709 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 CPSF3Q9UKF6 684 aaKnown RBP11.28□□□□□ -0.6
RTN3-201ENST00000338850 USH1CQ9Y6N9 552 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 VCANP13611 3396 aa11.28□□□□□ -0.6
RTN3-201ENST00000338850 PTPRSQ13332 1948 aa11.27□□□□□ -0.6
RTN3-201ENST00000338850 PRRC2BQ5JSZ5 2229 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms