RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SDC4P31431 198 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 PTPN7P35236 360 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 MATKP42679 507 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 PAFAH1B1P43034 410 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 GLUD2P49448 558 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 TAS2R40P59535 323 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 SLC25A11Q02978 314 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 CREMQ03060 361 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 TAF5Q15542 800 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 PSMD5Q16401 504 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 SPOUT1Q5T280 376 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 FAM117BQ6P1L5 589 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 ARFGAP1Q8N6T3 406 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 EXD1Q8NHP7 514 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 ABHD8Q96I13 439 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 SPATA17Q96L03 361 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 B3GALT6Q96L58 329 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 RNPC3Q96LT9 517 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 NAP1L3Q99457 506 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 LBHD1Q9BQE6 289 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 RHOBTB2Q9BYZ6 727 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 ULBP1Q9BZM6 244 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 COMMD8Q9NX08 183 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 RRN3Q9NYV6 651 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 MAFFQ9ULX9 164 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 PCDHB12Q9Y5F1 795 aa15.64■□□□□ 0.09
CCDC88C-202ENST00000334448 PIK3R2O00459 728 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 ENDOD1O94919 500 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 KRT7P08729 469 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 ATP2A2P16615 1042 aaKnown RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 DESP17661 470 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 CYP2F1P24903 491 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 YWHAZP63104 245 aaKnown RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 PTPROQ16827 1216 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 CCDC14Q49A88 953 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 CCDC181Q5TID7 509 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 TPGS2Q68CL5 300 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 STRADAQ7RTN6 431 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 SPATA4Q8NEY3 305 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 FBXO22Q8NEZ5 403 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 CLEC4CQ8WTT0 213 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 RIN2Q8WYP3 895 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 CAPZA3Q96KX2 299 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 TBCBQ99426 244 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 POPDC2Q9HBU9 364 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 RXFP1Q9HBX9 757 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 TMEM51Q9NW97 253 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 DDX56Q9NY93 547 aaKnown RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 ABI2Q9NYB9 513 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 FNIP2Q9P278 1114 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 AFF4Q9UHB7 1163 aaKnown RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 ZMYND8Q9ULU4 1186 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 LZTS1Q9Y250 596 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 RWDD3Q9Y3V2 267 aa15.63■□□□□ 0.09
CCDC88C-202ENST00000334448 CEP104O60308 925 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 LILRB3O75022 631 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 RNF8O76064 485 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 ABLIM3O94929 683 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 URODP06132 367 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 HAPLN1P10915 354 aaPredicted RBP15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 CPB1P15086 417 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 NOS2P35228 1153 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 NDUFV1P49821 464 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 DNA2P51530 1060 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 SLC5A3P53794 718 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 COPS2P61201 443 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 ROR1Q01973 937 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 TAZQ16635 292 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 HADHQ16836 314 aaKnown RBP15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 SLC25A52Q3SY17 297 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 PRSS55Q6UWB4 352 aaPredicted RBP15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 VSIG1Q86XK7 387 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 MMGT1Q8N4V1 131 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 LRRN4CLQ8ND94 238 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 TEKT4Q8WW24 435 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 GOLGA1Q92805 767 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 PGAP3Q96FM1 320 aaPredicted RBP15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 RBM41Q96IZ5 413 aaKnown RBP15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 NPY6RQ99463 290 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 CLSTN3Q9BQT9 956 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 SSX2IPQ9Y2D8 614 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 CDY1Q9Y6F8 540 aa15.62■□□□□ 0.09
CCDC88C-202ENST00000334448 WDR27A2RRH5 827 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 YJEFN3A6XGL0 299 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 E7ENQ6 273 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 FYNP06241 537 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 CTSAP10619 480 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 PYGMP11217 842 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 SYN1P17600 705 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 MIPP30301 263 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 GRIK1P39086 918 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 RPL10AP62906 217 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 KRT17Q04695 432 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 RAB33AQ14088 237 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 PPP2R5EQ16537 467 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 SEL1L2Q5TEA6 688 aa15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 OTUD1Q5VV17 481 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-202ENST00000334448 KIAA1841Q6NSI8 718 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms