RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 GFPT2O94808 682 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 PRAMEF12O95522 483 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 CKMP06732 381 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 CFHP08603 1231 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 TKTL1P51854 596 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 ADIGQ0VDE8 80 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 RAB41Q5JT25 222 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 CACNA2D4Q7Z3S7 1137 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 SLC44A3Q8N4M1 653 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 SLC35F5Q8WV83 523 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 SLC22A12Q96S37 553 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 CYP2S1Q96SQ9 504 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 PLA2G2FQ9BZM2 168 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 LRRC4Q9HBW1 653 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 NCANO14594 1321 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 ANAPC1Q9H1A4 1944 aa16.74■□□□□ 0.27
CCDC28A-201ENST00000332797 A0A1W2PQC6 194 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 SOBPA7XYQ1 873 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 NARSO43776 548 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 USP17L7P0C7H9 530 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 ZDHHC11BP0C7U3 371 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 LCP1P13796 627 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 SOX5P35711 763 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 STAT1P42224 750 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PDE6CP51160 858 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 MEA1Q16626 185 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PMF1Q6P1K2 205 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 VITQ6UXI7 678 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PASD1Q8IV76 773 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 SIX6OS1Q8N1H7 587 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 ARL14EPQ8N8R7 260 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 KCTD13Q8WZ19 329 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 RSPRY1Q96DX4 576 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 TLR8Q9NR97 1041 aaKnown RBP16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 USP3Q9Y6I4 520 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 A0A1W2PQH9 124 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 HEPACAM2A8MVW5 462 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PIK3R2O00459 728 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 ALADP13716 330 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 CYP11B1P15538 503 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 HDCP19113 662 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 WEE1P30291 646 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 KRT9P35527 623 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 GPD2P43304 727 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PGFP49763 221 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 GRM2Q14416 872 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 TAF3Q5VWG9 929 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 CCDC186Q7Z3E2 898 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 USP13Q92995 863 aaPredicted RBP16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 E2F7Q96AV8 911 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 ULBP1Q9BZM6 244 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PDCL3Q9H2J4 239 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 CCSER2Q9H7U1 834 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 ST7Q9NRC1 585 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 PCDHGC3Q9UN70 934 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 DUSP12Q9UNI6 340 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 CCL26Q9Y258 94 aa16.73■□□□□ 0.27
CCDC28A-201ENST00000332797 NCOR1O75376 2440 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 MUC3AQ02505 3323 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 ZBED1O96006 694 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 OAS1P00973 400 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 ZXDAP98168 799 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 HECTD3Q5T447 861 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 SNX30Q5VWJ9 437 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 NOP9Q86U38 636 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 UBALD2Q8IYN6 164 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 CELF5Q8N6W0 485 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 TTC16Q8NEE8 873 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 XPO4Q9C0E2 1151 aaKnown RBP16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 NMUR1Q9HB89 426 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 TDP1Q9NUW8 608 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 NAGPAQ9UK23 515 aa16.72■□□□□ 0.27
CCDC28A-201ENST00000332797 MYO10Q9HD67 2058 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 PI4K2BG5E9Z4 385 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 TPM3P06753 285 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 SRFP11831 508 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 PFKLP17858 780 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 PSMC3P17980 439 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 ARID5AQ03989 594 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 SCD5Q86SK9 330 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 MFSD6LQ8IWD5 586 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 YAF2Q8IY57 180 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 EPS8L1Q8TE68 723 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 DEPDC1BQ8WUY9 529 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 NDRG1Q92597 394 aaKnown RBP16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 HSFY1Q96LI6 401 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 NACA2Q9H009 215 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 RNF38Q9H0F5 515 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 KIF9Q9HAQ2 790 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 OSER1Q9NX31 292 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 OBP2AQ9NY56 170 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 CYTH4Q9UIA0 394 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 CEP83Q9Y592 693 aa16.71■□□□□ 0.27
CCDC28A-201ENST00000332797 COCHO43405 550 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 CBFA2T2O43439 604 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 TLR5O60602 858 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 GABBR2O75899 941 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 MBL2P11226 248 aaPredicted RBP16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 PSEN1P49768 467 aa16.7■□□□□ 0.26
CCDC28A-201ENST00000332797 TUBP50607 506 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms