RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SSU72Q9NP77 194 aaKnown RBP14.03□□□□□ -0.16
SKA3-201ENST00000298260 RAB20Q9NX57 234 aa14.03□□□□□ -0.16
SKA3-201ENST00000298260 ZNF219Q9P2Y4 722 aaPredicted RBP14.03□□□□□ -0.16
SKA3-201ENST00000298260 XPO7Q9UIA9 1087 aaKnown RBP14.03□□□□□ -0.16
SKA3-201ENST00000298260 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.03□□□□□ -0.16
SKA3-201ENST00000298260 TRIM43BA6NCK2 446 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 PIK3R2O00459 728 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 TM4SF1P30408 202 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 RPL22P35268 128 aaKnown RBP14.02□□□□□ -0.16
SKA3-201ENST00000298260 SERPINB8P50452 374 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 PEX3P56589 373 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 RC3H1Q5TC82 1133 aaKnown RBP14.02□□□□□ -0.16
SKA3-201ENST00000298260 SLFN13Q68D06 897 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 TPTE2Q6XPS3 522 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 STXBP4Q6ZWJ1 553 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 SV2AQ7L0J3 742 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 ANKRD23Q86SG2 305 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 SLC9A9Q8IVB4 645 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 UNC45BQ8IWX7 931 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.02□□□□□ -0.16
SKA3-201ENST00000298260 CIDEBQ9UHD4 219 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 SERPINB13Q9UIV8 391 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 PAIP2BQ9ULR5 123 aaKnown RBP14.02□□□□□ -0.16
SKA3-201ENST00000298260 FARP1Q9Y4F1 1045 aaPredicted RBP14.02□□□□□ -0.16
SKA3-201ENST00000298260 HEY1Q9Y5J3 304 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 AP4B1Q9Y6B7 739 aa14.02□□□□□ -0.16
SKA3-201ENST00000298260 PCNTO95613 3336 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 RBM47A0AV96 593 aaKnown RBP14.02□□□□□ -0.17
SKA3-201ENST00000298260 TBC1D12O60347 775 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 OTUD4Q01804 1114 aaKnown RBP14.02□□□□□ -0.17
SKA3-201ENST00000298260 OGDHQ02218 1023 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 ITGA9Q13797 1035 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 C16orf72Q14CZ0 275 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 FAXCQ5TGI0 409 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 KRT39Q6A163 491 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 CC2D2BQ6DHV5 1058 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 SPOCD1Q6ZMY3 1216 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 NCCRP1Q6ZVX7 275 aaPredicted RBP14.02□□□□□ -0.17
SKA3-201ENST00000298260 MON1BQ7L1V2 547 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 PHTF2Q8N3S3 785 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 FAM71DQ8N9W8 422 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 ACTL9Q8TC94 416 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 PPP4R1Q8TF05 950 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 STRA6Q9BX79 667 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 ARMC7Q9H6L4 198 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 DNAJB4Q9UDY4 337 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 FAF1Q9UNN5 650 aaPredicted RBP14.02□□□□□ -0.17
SKA3-201ENST00000298260 SHOC2Q9UQ13 582 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 HBS1LQ9Y450 684 aaKnown RBP14.02□□□□□ -0.17
SKA3-201ENST00000298260 DAGLAQ9Y4D2 1042 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 MAD1L1Q9Y6D9 718 aa14.02□□□□□ -0.17
SKA3-201ENST00000298260 TBX3O15119 743 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 PSTPIP1O43586 416 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 WEE2P0C1S8 567 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 CIITAP33076 1130 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 MRPS22P82650 360 aaKnown RBP14.01□□□□□ -0.17
SKA3-201ENST00000298260 SULT2A1Q06520 285 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 ZNF252P-AS1Q0IIN9 211 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 TCP10Q12799 353 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 LPIN1Q14693 890 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 KLHL38Q2WGJ6 581 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 KYAT3Q6YP21 454 aaKnown RBP14.01□□□□□ -0.17
SKA3-201ENST00000298260 FRMD7Q6ZUT3 714 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 HAUS6Q7Z4H7 955 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 TTC13Q8NBP0 860 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 RNF169Q8NCN4 708 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 FOXP3Q9BZS1 431 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 CD209Q9NNX6 404 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 MAN1C1Q9NR34 630 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 SNCAIPQ9Y6H5 919 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 ZNF536O15090 1300 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 PSMD10O75832 226 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 MAP3K6O95382 1288 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 STAMBPO95630 424 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 CD48P09326 243 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 NCF2P19878 526 aaPredicted RBP14.01□□□□□ -0.17
SKA3-201ENST00000298260 RXRGP48443 463 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 TATDN1Q6P1N9 297 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 LARGE2Q8N3Y3 721 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 FBXL13Q8NEE6 735 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 FNDC8Q8TC99 324 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 COPS7BQ9H9Q2 264 aaPredicted RBP14.01□□□□□ -0.17
SKA3-201ENST00000298260 ACSS2Q9NR19 701 aa14.01□□□□□ -0.17
SKA3-201ENST00000298260 BARX2Q9UMQ3 279 aaPredicted RBP14.01□□□□□ -0.17
SKA3-201ENST00000298260 XPOTO43592 962 aaKnown RBP14□□□□□ -0.17
SKA3-201ENST00000298260 PIM1P11309 404 aaPredicted RBP14□□□□□ -0.17
SKA3-201ENST00000298260 CDH2P19022 906 aaPredicted RBP14□□□□□ -0.17
SKA3-201ENST00000298260 BTG3Q14201 252 aaPredicted RBP14□□□□□ -0.17
SKA3-201ENST00000298260 TEX44Q53QW1 395 aa14□□□□□ -0.17
SKA3-201ENST00000298260 MROH9Q5TGP6 573 aa14□□□□□ -0.17
SKA3-201ENST00000298260 CIAPIN1Q6FI81 312 aa14□□□□□ -0.17
SKA3-201ENST00000298260 PRR5LQ6MZQ0 368 aa14□□□□□ -0.17
SKA3-201ENST00000298260 ZNF410Q86VK4 478 aa14□□□□□ -0.17
SKA3-201ENST00000298260 FBXO11Q86XK2 927 aa14□□□□□ -0.17
SKA3-201ENST00000298260 CRLF3Q8IUI8 442 aa14□□□□□ -0.17
SKA3-201ENST00000298260 NAT8LQ8N9F0 302 aa14□□□□□ -0.17
SKA3-201ENST00000298260 AGR3Q8TD06 166 aa14□□□□□ -0.17
SKA3-201ENST00000298260 DIS3LQ8TF46 1054 aaKnown RBP14□□□□□ -0.17
SKA3-201ENST00000298260 PPP1R36Q96LQ0 422 aa14□□□□□ -0.17
SKA3-201ENST00000298260 MCEEQ96PE7 176 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms