RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 LRRC1Q9BTT6 524 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 RHOBTB2Q9BYZ6 727 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 ULBP1Q9BZM6 244 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 SLITRK6Q9H5Y7 841 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.78□□□□□ -0.04
SS18-201ENST00000269137 PRKAG2Q9UGJ0 569 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 MTUS1Q9ULD2 1270 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 USP18Q9UMW8 372 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 NR2E1Q9Y466 385 aa14.78□□□□□ -0.04
SS18-201ENST00000269137 DAB1O75553 588 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 TRUB2O95900 331 aaKnown RBP14.77□□□□□ -0.05
SS18-201ENST00000269137 H2AFXP16104 143 aaPredicted RBP14.77□□□□□ -0.05
SS18-201ENST00000269137 CDR1P51861 262 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 DAOAP59103 153 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 SMARCB1Q12824 385 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 C15orf59Q2T9L4 293 aaPredicted RBP14.77□□□□□ -0.05
SS18-201ENST00000269137 TXNRD3NBQ6F5E7 133 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 PM20D1Q6GTS8 502 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 C8orf74Q6P047 294 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 WDR93Q6P2C0 686 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 KCNT2Q6UVM3 1135 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 VSTM1Q6UX27 236 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 C16orf59Q7L2K0 433 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 GPRIN1Q7Z2K8 1008 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 CMASQ8NFW8 434 aaPredicted RBP14.77□□□□□ -0.05
SS18-201ENST00000269137 IRGQQ8WZA9 623 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 CFAP57Q96MR6 1250 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 SLITRK1Q96PX8 696 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 SLC2A13Q96QE2 648 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 USP3Q9Y6I4 520 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 ALPK3Q96L96 1907 aa14.77□□□□□ -0.05
SS18-201ENST00000269137 ZBED1O96006 694 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 OR4Q2P0C623 313 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 GJC1P36383 396 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 MAGEA11P43364 429 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 SIX1Q15475 284 aaPredicted RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 CYP1B1Q16678 543 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 USP41Q3LFD5 358 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 RTP2Q5QGT7 225 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 SH3PXD2AQ5TCZ1 1133 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 ZDHHC14Q8IZN3 488 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 PRELID2Q8N945 189 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 RAPGEF5Q92565 580 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 NT5C3BQ969T7 300 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 ZNF558Q96NG5 402 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 PNKPQ96T60 521 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 TBCBQ99426 244 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 OSBPL8Q9BZF1 889 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.76□□□□□ -0.05
SS18-201ENST00000269137 PCDHB5Q9Y5E4 795 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 PATJQ8NI35 1801 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 TCRBV7S2A1N4TA0A589 114 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 PRPSAP2O60256 369 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 KRT1P04264 644 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 RALAP11233 206 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 CYP2F1P24903 491 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 MCM3P25205 808 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 NOS2P35228 1153 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 RABGGTBP53611 331 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 ATP11AP98196 1134 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 GPR17Q13304 367 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 KLF1Q13351 362 aaPredicted RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 BTG3Q14201 252 aaPredicted RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 SMC1AQ14683 1233 aaKnown RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 TAZQ16635 292 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 SLC25A52Q3SY17 297 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 BOLA3Q53S33 107 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 MFSD7Q6UXD7 560 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 STRADAQ7RTN6 431 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 TAS1R1Q7RTX1 841 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 ADAT2Q7Z6V5 191 aaKnown RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 CCDC50Q8IVM0 306 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 KLHL7Q8IXQ5 586 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 DEFB106AQ8N104 65 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 FAM172AQ8WUF8 416 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 NDRG1Q92597 394 aaKnown RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 FAM149B1Q96BN6 582 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 B3GALT6Q96L58 329 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 DDX47Q9H0S4 455 aaKnown RBP14.76□□□□□ -0.05
SS18-201ENST00000269137 POPDC2Q9HBU9 364 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 CHST7Q9NS84 486 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 PCSK1NQ9UHG2 260 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 EFR3BQ9Y2G0 817 aa14.76□□□□□ -0.05
SS18-201ENST00000269137 C3orf70A6NLC5 250 aaPredicted RBP14.75□□□□□ -0.05
SS18-201ENST00000269137 TNFRSF10BO14763 440 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 PHF2O75151 1096 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 ENDOD1O94919 500 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 FGBP02675 491 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 USP17L7P0C7H9 530 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 RARAP10276 462 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 LAG3P18627 525 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 CHRNA3P32297 505 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 GRIK1P39086 918 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 HDAC4P56524 1084 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 FPGSQ05932 587 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 BRD3Q15059 726 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 CDO1Q16878 200 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 ODF2Q5BJF6 829 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 SPOCD1Q6ZMY3 1216 aa14.75□□□□□ -0.05
SS18-201ENST00000269137 CYP4V2Q6ZWL3 525 aaPredicted RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms