RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RTN3O95197 1032 aaPredicted RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 PHBP35232 272 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SLC25A11Q02978 314 aaKnown RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 PIGHQ14442 188 aaPredicted RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 CCDC142Q17RM4 750 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SLFN12LQ6IEE8 588 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ADGRD1Q6QNK2 874 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 PDIK1LQ8N165 341 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 PPM1NQ8N819 430 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 BANPQ8N9N5 519 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 RDM1Q8NG50 284 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 FBXO27Q8NI29 283 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 UBA3Q8TBC4 463 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 WDR60Q8WVS4 1066 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 TRAPPC12Q8WVT3 735 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ACSS3Q9H6R3 686 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ACAD9Q9H845 621 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 BATF3Q9NR55 127 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SENP1Q9P0U3 644 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SLC45A1Q9Y2W3 748 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 STYXL1Q9Y6J8 313 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 IKBKGQ9Y6K9 419 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 TCRBV9S1A1TA0A576 114 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 GYG2O15488 501 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 B4GALT5O43286 388 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ATP5HO75947 161 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ZWINTO95229 277 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ERBB2P04626 1255 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 MYL2P10916 166 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 MIPP30301 263 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 NAMPTP43490 491 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 BLMHQ13867 455 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 C15orf59Q2T9L4 293 aaPredicted RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 MUM1Q2TAK8 710 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 SLC45A4Q5BKX6 768 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 PPP1R15BQ5SWA1 713 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 DRICH1Q6PGQ1 229 aaPredicted RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 DARS2Q6PI48 645 aaKnown RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 RIOX2Q8IUF8 465 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 MZB1Q8WU39 189 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 GTF3C2Q8WUA4 911 aaPredicted RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 UCMAQ8WVF2 138 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 INPP5DQ92835 1189 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 TWNKQ96RR1 684 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 TRIM55Q9BYV6 548 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 NIF3L1Q9GZT8 377 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 DHX33Q9H6R0 707 aaKnown RBP10.49□□□□□ -0.73
LIG3-201ENST00000262327 ZNF408Q9H9D4 720 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 NMRK2Q9NPI5 230 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ZNF232Q9UNY5 417 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 NR2E3Q9Y5X4 410 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 ADGRA2Q96PE1 1338 aa10.49□□□□□ -0.73
LIG3-201ENST00000262327 DKC1O60832 514 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIG3-201ENST00000262327 LDHAP00338 332 aaKnown RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 LINGO3P0C6S8 592 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 GJA5P36382 358 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 ARL2P36404 184 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 RANBP1P43487 201 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 RCN2Q14257 317 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 ACSBG2Q5FVE4 666 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 C4orf50Q6ZRC1 276 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 RGS9BPQ6ZS82 235 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 CEP128Q6ZU80 1094 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 VPS52Q8N1B4 723 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 RNF149Q8NC42 400 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 EZH1Q92800 747 aaPredicted RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 PIWIL1Q96J94 861 aaKnown RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 SUDS3Q9H7L9 328 aaPredicted RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 CNTN6Q9UQ52 1028 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 HEY1Q9Y5J3 304 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 NFASCO94856 1347 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 CXorf49A8MYA2 514 aaPredicted RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 SPATA31C2B4DYI2 1134 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 H7C0C1 242 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 CELF2O95319 508 aaKnown RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 INHBAP08476 426 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 ATP5OP48047 213 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 RASSF2P50749 326 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 GTF2A2P52657 109 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 RTP1P59025 263 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 LAMB3Q13751 1172 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 DPYSL3Q14195 570 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 GNPTABQ3T906 1256 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 SCYL2Q6P3W7 929 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 BRSK2Q8IWQ3 736 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 MCUR1Q96AQ8 359 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 CLPTM1LQ96KA5 538 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 NLRP4Q96MN2 994 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 PCYT2Q99447 389 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 KCNK13Q9HB14 408 aa10.48□□□□□ -0.73
LIG3-201ENST00000262327 DDX56Q9NY93 547 aaKnown RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.48□□□□□ -0.73
LIG3-201ENST00000262327 TRIM49D1C9J1S8 452 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 H0YCG3 227 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 WFS1O76024 890 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ENO1P06733 434 aaKnown RBP10.47□□□□□ -0.73
LIG3-201ENST00000262327 CDH6P55285 790 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 DUOXA2Q1HG44 320 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 LRRC38Q5VT99 294 aa10.47□□□□□ -0.73
LIG3-201ENST00000262327 ZCCHC23Q6ZST2 131 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms