RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RP9Q8TA86 221 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MYDGFQ969H8 173 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 AVENQ9NQS1 362 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 RBM47A0AV96 593 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 RBAK-RBAKDNI3L0D1 243 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GNPATO15228 680 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FXR2P51116 673 aaKnown RBP eCLIP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 HPCAP84074 193 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TNK2Q07912 1038 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GRM4Q14833 912 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 C12orf60Q5U649 245 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ANKRD40Q6AI12 368 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 VPS37AQ8NEZ2 397 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FNDC8Q8TC99 324 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KAT2BQ92831 832 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 L3MBTL3Q96JM7 780 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 RTKNQ9BST9 563 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 BAIAP2Q9UQB8 552 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 NCANO14594 1321 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TNRQ92752 1358 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 NFAT5O94916 1531 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM49D1C9J1S8 452 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF135P52742 658 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CHI3L2Q15782 390 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ARMCX2Q7L311 632 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FBXO25Q8TCJ0 367 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FCGR1BQ92637 280 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TUBA1CQ9BQE3 449 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 OR2B2Q9GZK3 357 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CAB39LQ9H9S4 337 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GPCPD1Q9NPB8 672 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 AURKCQ9UQB9 309 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 BBIP1A8MTZ0 92 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PRR29P0C7W0 189 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SFNP31947 248 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CIITAP33076 1130 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF829Q3KNS6 432 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ZC3H12BQ5HYM0 836 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FAM160B1Q5W0V3 765 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TPTE2Q6XPS3 522 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 DEFB107AQ8IZN7 70 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 EPS8L3Q8TE67 593 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 RUBCNLQ9H714 662 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ACAD9Q9H845 621 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MARCH7Q9H992 704 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KBTBD4Q9NVX7 518 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 C3orf18Q9UK00 162 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 STAP1Q9ULZ2 295 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PHF24Q9UPV7 400 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 GRIN2DO15399 1336 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 IRGMA1A4Y4 181 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SH3PXD2BA1X283 911 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM13O60858 407 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 OATP04181 439 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 RBP1P09455 135 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MAGEA10P43363 369 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FMO5P49326 533 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 HARS2P49590 506 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 HERC3Q15034 1050 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 BSPRYQ5W0U4 402 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 IYDQ6PHW0 289 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 MOXD1Q6UVY6 613 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CCDC149Q6ZUS6 474 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FBXO11Q86XK2 927 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CGREF1Q99674 301 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CHCHD6Q9BRQ6 235 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SLC6A15Q9H2J7 730 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 LY9Q9HBG7 655 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 BARHL2Q9NY43 387 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 FAM32AQ9Y421 112 aaKnown RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 KIF28PB7ZC32 967 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 NOS1APO75052 506 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-220ENST00000641603 LRRN2O75325 713 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 PRDM1O75626 825 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 IFNA7P01567 189 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CYP2C9P11712 490 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 ITGA7Q13683 1181 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 CHSY1Q86X52 802 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 APOL2Q9BQE5 337 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 NCKIPSDQ9NZQ3 722 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 SLC12A6Q9UHW9 1150 aa4.83□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM43BA6NCK2 446 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 M0R2C6 588 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 IL6P05231 212 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 NME5P56597 212 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 KRT24Q2M2I5 525 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TTI2Q6NXR4 508 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CDCA5Q96FF9 252 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 RMND5AQ9H871 391 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 IMPAD1Q9NX62 359 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CLIC5Q9NZA1 410 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM38O00635 465 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CCT8P50990 548 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 MMRN1Q13201 1228 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TRIP4Q15650 581 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 HELQQ8TDG4 1101 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TMA16Q96EY4 203 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PAFAH2Q99487 392 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ADPGKQ9BRR6 497 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SYNDIG1Q9H7V2 258 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms