RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 HOXB3P14651 431 aaPredicted RBP16.02■□□□□ 0.16
SYNE2-228ENST00000639659 ENGP17813 658 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 MRPS21P82921 87 aaKnown RBP16.02■□□□□ 0.16
SYNE2-228ENST00000639659 CEBPZQ03701 1054 aaKnown RBP16.02■□□□□ 0.16
SYNE2-228ENST00000639659 MESP2Q0VG99 397 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 LMAN2Q12907 356 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 GAB4Q2WGN9 574 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 FAM171BQ6P995 826 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 VSTM1Q6UX27 236 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 BRAPQ7Z569 592 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 GPD1LQ8N335 351 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 IL17RCQ8NAC3 791 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 CXorf38Q8TB03 319 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 KBTBD7Q8WVZ9 684 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 SPATA17Q96L03 361 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 STRA6Q9BX79 667 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 PANK2Q9BZ23 570 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 RNF38Q9H0F5 515 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 SNX25Q9H3E2 840 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 CLIC4Q9Y696 253 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 PTPRDP23468 1912 aa16.02■□□□□ 0.15
SYNE2-228ENST00000639659 MYOFQ9NZM1 2061 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 SLC9A3R1O14745 358 aaPredicted RBP16.01■□□□□ 0.15
SYNE2-228ENST00000639659 ADH1CP00326 375 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 ADH5P11766 374 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 TCF3P15923 654 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 P2RY2P41231 377 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 MAPRE1Q15691 268 aaKnown RBP16.01■□□□□ 0.15
SYNE2-228ENST00000639659 EOGTQ5NDL2 527 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 LYSMD4Q5XG99 296 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 NAT16Q8N8M0 369 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 KDF1Q8NAX2 398 aaPredicted RBP16.01■□□□□ 0.15
SYNE2-228ENST00000639659 OR6B3Q8NGW1 331 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 DNAJC19Q96DA6 116 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 PCED1BQ96HM7 432 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 CLIC6Q96NY7 704 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 FNBP1Q96RU3 617 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 TMEM74BQ9NUR3 256 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 PANK4Q9NVE7 773 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 INTS13Q9NVM9 706 aa16.01■□□□□ 0.15
SYNE2-228ENST00000639659 ASCC3Q8N3C0 2202 aaKnown RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 ADAMTS9Q9P2N4 1935 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 ZNF840PA6NDX5 716 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 STAT6P42226 847 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 WASP42768 502 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 SIM1P81133 766 aaPredicted RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 SLC7A9P82251 487 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 TAF10Q12962 218 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 TDRD10Q5VZ19 366 aaKnown RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 CBWD2Q8IUF1 395 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 SYT12Q8IV01 421 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 HDDC3Q8N4P3 179 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 SPRYD3Q8NCJ5 442 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 OLIG1Q8TAK6 271 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 SLITRK1Q96PX8 696 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 MRPL45Q9BRJ2 306 aaKnown RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 EHD2Q9NZN4 543 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 EVLQ9UI08 416 aaPredicted RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 MBD1Q9UIS9 605 aaPredicted RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 WASF3Q9UPY6 502 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 ZSCAN21Q9Y5A6 473 aaPredicted RBP16■□□□□ 0.15
SYNE2-228ENST00000639659 AKAP13Q12802 2813 aa16■□□□□ 0.15
SYNE2-228ENST00000639659 ZZEF1O43149 2961 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 TNRC6BQ9UPQ9 1833 aaKnown RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 TMEM8BA6NDV4 472 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 ZNF233A6NK53 670 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 SRRM3A6NNA2 597 aaPredicted RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 TNFRSF10BO14763 440 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 DLATP10515 647 aaKnown RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 IRF1P10914 325 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 WARSP23381 471 aaKnown RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 ITPKAP23677 461 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 RPL6Q02878 288 aaKnown RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 ALCAMQ13740 583 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 DUOXA2Q1HG44 320 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 C8orf34Q49A92 452 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 LY6G5CQ5SRR4 150 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 DPH6Q7L8W6 267 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 ADGRG2Q8IZP9 1017 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 MYCBPAPQ8TBZ2 947 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 GATA6Q92908 595 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 TMEM121BQ9BXQ6 578 aaPredicted RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 ZNF518BQ9C0D4 1074 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 DPEP3Q9H4B8 488 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 OLFML3Q9NRN5 406 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 FBXO2Q9UK22 296 aaPredicted RBP15.99■□□□□ 0.15
SYNE2-228ENST00000639659 KLK13Q9UKR3 277 aa15.99■□□□□ 0.15
SYNE2-228ENST00000639659 TBC1D3BA6NDS4 549 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.98■□□□□ 0.15
SYNE2-228ENST00000639659 CLDN5O00501 218 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 PFKLP17858 780 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 GNL1P36915 607 aaPredicted RBP15.98■□□□□ 0.15
SYNE2-228ENST00000639659 GRIA2P42262 883 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 CACNA2D1P54289 1103 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 TNNC1P63316 161 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 BYSLQ13895 437 aaKnown RBP15.98■□□□□ 0.15
SYNE2-228ENST00000639659 ANO4Q32M45 955 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 BTBD8Q5XKL5 378 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 RHBDF2Q6PJF5 856 aa15.98■□□□□ 0.15
SYNE2-228ENST00000639659 DDX42Q86XP3 938 aaKnown RBP eCLIP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms