RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CARNMT1Q8N4J0 409 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF507Q8TCN5 953 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CEP170P1Q96L14 293 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ORAI2Q96SN7 254 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 YME1L1Q96TA2 773 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MXD3Q9BW11 206 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 RNF41Q9H4P4 317 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MAGEE1Q9HCI5 957 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 C20orf96Q9NUD7 363 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CCDC59Q9P031 241 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 KIAA1522Q9P206 1035 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ARHGAP20Q9P2F6 1191 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 COPG2Q9UBF2 871 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TLK1Q9UKI8 766 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 NUP50Q9UKX7 468 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 B3GNT3Q9Y2A9 372 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 GDAQ9Y2T3 454 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SYNGAP1Q96PV0 1343 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 A6NL46 340 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 C12orf71A8MTZ7 269 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 KLRF2D3W0D1 207 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 RNMTO43148 476 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 NUAK1O60285 661 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PCNAP12004 261 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 FDPSP14324 419 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 NPR1P16066 1061 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CD9P21926 228 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PCSK6P29122 969 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SOX5P35711 763 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PFKPQ01813 784 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MAPK7Q13164 816 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SLC39A6Q13433 755 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SPCS2Q15005 226 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CARTPTQ16568 116 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TXNRD1Q16881 649 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 GARNL3Q5VVW2 1013 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 UTS2BQ765I0 119 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ZBTB46Q86UZ6 589 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CRLF3Q8IUI8 442 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 DEPDC4Q8N2C3 294 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ARL6IP6Q8N6S5 226 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PSPC1Q8WXF1 523 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 VPS33AQ96AX1 596 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 C12orf43Q96C57 262 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF560Q96MR9 790 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 KLHL32Q96NJ5 620 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 QKIQ96PU8 341 aaKnown RBP eCLIP5.95□□□□□ -1.461e-6■■■■□ 23.7
SCN1A-216ENST00000637968 TUBA1CQ9BQE3 449 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PPM1HQ9ULR3 514 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MRPL11Q9Y3B7 192 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PCDHB6Q9Y5E3 794 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CEPT1Q9Y6K0 416 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SH3D21A4FU49 640 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ITGB3P05106 788 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 THRAP10827 490 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PLS3P13797 630 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 EIF2AK2P19525 551 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SOX11P35716 441 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 RAD23AP54725 363 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 VBP1P61758 197 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CTAG1AP78358 180 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 GNA12Q03113 381 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CENPCQ03188 943 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CHRNEQ04844 493 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 BFSP1Q12934 665 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 BNIP3Q12983 259 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CSTF3Q12996 717 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SLC18A3Q16572 532 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PDK4Q16654 411 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ZBED5Q49AG3 693 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ARSHQ5FYA8 562 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 STYK1Q6J9G0 422 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 HMBOX1Q6NT76 420 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 UGT2A3Q6UWM9 527 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 OTOP3Q7RTS5 596 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PCGF5Q86SE9 256 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 RELL1Q8IUW5 271 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 RTKN2Q8IZC4 609 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 FAM109AQ8N4B1 249 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CERKQ8TCT0 537 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 EEF2KMTQ96G04 330 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 OXNAD1Q96HP4 312 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ERGIC2Q96RQ1 377 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MANSC1Q9H8J5 431 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 FAM105AQ9NUU6 356 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ABI2Q9NYB9 513 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PEX1O43933 1283 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CD4P01730 458 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 SNRPA1P09661 255 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GLULP15104 373 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 RXRAP19793 462 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GRIA2P42262 883 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 NR4A2P43354 598 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 MAGEA4P43358 317 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ABCG1P45844 678 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF135P52742 658 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF174Q15697 407 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 AASDHQ4L235 1098 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TNNI3KQ59H18 835 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TNFAIP8L3Q5GJ75 292 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms