RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 HLA-DRAP01903 254 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 EPB41P11171 864 aaKnown RBP12.37□□□□□ -0.43
CLN3-257ENST00000637110 DDX6P26196 483 aaKnown RBP eCLIP12.37□□□□□ -0.43
CLN3-257ENST00000637110 EDRF1Q3B7T1 1238 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 ARHGAP29Q52LW3 1261 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 TCERG1LQ5VWI1 586 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 SPOPLQ6IQ16 392 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 CC2D1AQ6P1N0 951 aaPredicted RBP12.37□□□□□ -0.43
CLN3-257ENST00000637110 CMTM8Q8IZV2 173 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 B3GALNT2Q8NCR0 500 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 FAM3CQ92520 227 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 TAF4BQ92750 862 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 ZFYVE19Q96K21 471 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 TNIP3Q96KP6 325 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 MKNK1Q9BUB5 465 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 GTPBP4Q9BZE4 634 aaKnown RBP12.37□□□□□ -0.43
CLN3-257ENST00000637110 LMAN1LQ9HAT1 526 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 EHD2Q9NZN4 543 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 ZMYM5Q9UJ78 669 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 NME7Q9Y5B8 376 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 PIAS3Q9Y6X2 628 aa12.37□□□□□ -0.43
CLN3-257ENST00000637110 TRAV19A0A0A6YYK7 116 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 CHURC1-FNTBB4DL54 471 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 F8VP50 259 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 CLDN5O00501 218 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 CHADO15335 359 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 STX10O60499 249 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 GADD45BO75293 160 aaPredicted RBP12.36□□□□□ -0.43
CLN3-257ENST00000637110 PRAMEF12O95522 483 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 CKMP06732 381 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 ANP32AP39687 249 aaKnown RBP12.36□□□□□ -0.43
CLN3-257ENST00000637110 FNTBP49356 437 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 DCAF17Q5H9S7 520 aaPredicted RBP12.36□□□□□ -0.43
CLN3-257ENST00000637110 STPG1Q5TH74 334 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 LRSAM1Q6UWE0 723 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 DENND5BQ6ZUT9 1274 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 TMEM150AQ86TG1 271 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 ACOT1Q86TX2 421 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 MON1AQ86VX9 555 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 ZNF687Q8N1G0 1237 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 SPEM1Q8N4L4 309 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 FAM160A2Q8N612 972 aaPredicted RBP12.36□□□□□ -0.43
CLN3-257ENST00000637110 LSM14BQ9BX40 385 aaKnown RBP12.36□□□□□ -0.43
CLN3-257ENST00000637110 ZNF518BQ9C0D4 1074 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 ELOVL4Q9GZR5 314 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 VRTNQ9H8Y1 702 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 OBP2AQ9NY56 170 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 NCANO14594 1321 aa12.36□□□□□ -0.43
CLN3-257ENST00000637110 PSMA7O14818 248 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 ZNF806P0C7X5 589 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 CD58P19256 250 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 CCNE1P24864 410 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 NDST1P52848 882 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 FKBP3Q00688 224 aaKnown RBP12.35□□□□□ -0.43
CLN3-257ENST00000637110 PLCB2Q00722 1185 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 SATB1Q01826 763 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 PPP3CAQ08209 521 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 ORC1Q13415 861 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 LRRC32Q14392 662 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 SF3A2Q15428 464 aaKnown RBP12.35□□□□□ -0.43
CLN3-257ENST00000637110 C1orf220Q5T0J3 134 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 KRT39Q6A163 491 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 ANKRD40Q6AI12 368 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 KLHL10Q6JEL2 608 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 PSAPL1Q6NUJ1 521 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 TAS1R2Q8TE23 839 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 TRMT2BQ96GJ1 504 aaKnown RBP12.35□□□□□ -0.43
CLN3-257ENST00000637110 LOXL4Q96JB6 756 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 SPATA17Q96L03 361 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 C8orf48Q96LL4 319 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 MYRFLQ96LU7 910 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 B3GNT5Q9BYG0 378 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 DNAI2Q9GZS0 605 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 SDCBP2Q9H190 292 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 TMEM8AQ9HCN3 771 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 GKN1Q9NS71 199 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 TDP1Q9NUW8 608 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 TRPM5Q9NZQ8 1165 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 CHMP5Q9NZZ3 219 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 LHX6Q9UPM6 363 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 ZNF638Q14966 1978 aaKnown RBP12.35□□□□□ -0.43
CLN3-257ENST00000637110 SDK1Q7Z5N4 2213 aa12.35□□□□□ -0.43
CLN3-257ENST00000637110 TRIM49BA6NDI0 452 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 SHISA7A6NL88 538 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 BIN1O00499 593 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 PAPSS2O95340 614 aaPredicted RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 ASS1P00966 412 aaKnown RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 USP17L7P0C7H9 530 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 HDCP19113 662 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 WEE1P30291 646 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 GTF2H1P32780 548 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 SOX9P48436 509 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 MXI1P50539 228 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 NOP14P78316 857 aaKnown RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 FCHO2Q0JRZ9 810 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 SRSF5Q13243 272 aaKnown RBP12.34□□□□□ -0.43
CLN3-257ENST00000637110 ZCWPW2Q504Y3 356 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 WDR44Q5JSH3 913 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 C1orf228Q6PIY5 440 aa12.34□□□□□ -0.43
CLN3-257ENST00000637110 FAM35AQ86V20 835 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms