RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 KLHL11Q9NVR0 708 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 GJB5O95377 273 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 PDGFRAP16234 1089 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 SLC1A1P43005 524 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 GPR15P49685 360 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 C2orf54Q08AI8 447 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 KCTD19Q17RG1 926 aaPredicted RBP21.12■□□□□ 0.97
CLN3-250ENST00000636839 ERCC6LQ2NKX8 1250 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 HFE2Q6ZVN8 426 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 CMTR2Q8IYT2 770 aaKnown RBP21.12■□□□□ 0.97
CLN3-250ENST00000636839 CEP112Q8N8E3 955 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.12■□□□□ 0.97
CLN3-250ENST00000636839 KCTD13Q8WZ19 329 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 LRRC4Q9HBW1 653 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 RANBP2P49792 3224 aaKnown RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 MIF4GDA9UHW6 222 aaKnown RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 CTIFO43310 598 aaKnown RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 TBC1D4O60343 1298 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 SOAT2O75908 522 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 USP17L7P0C7H9 530 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 CTNNA2P26232 953 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ACADSBP45954 432 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ATP11AP98196 1134 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 CCDC14Q49A88 953 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 CCDC181Q5TID7 509 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ADAT2Q7Z6V5 191 aaKnown RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 SLC39A11Q8N1S5 342 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 UBL4BQ8N7F7 174 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 COLGALT1Q8NBJ5 622 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 SCAMP5Q8TAC9 235 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 PBKQ96KB5 322 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ZNF558Q96NG5 402 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ULBP1Q9BZM6 244 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 NLRC5Q86WI3 1866 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 VNN2O95498 520 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 PIGHQ14442 188 aaPredicted RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 CDO1Q16878 200 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ZNF280DQ6N043 979 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 ANKS1BQ7Z6G8 1248 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 RNF168Q8IYW5 571 aaPredicted RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 RIN2Q8WYP3 895 aaPredicted RBP21.11■□□□□ 0.97
CLN3-250ENST00000636839 CRISPLD1Q9H336 500 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 SLC27A5Q9Y2P5 690 aa21.11■□□□□ 0.97
CLN3-250ENST00000636839 CCDC66A2RUB6 948 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 CTAGE15A4D2H0 777 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 LRCH4O75427 683 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 CTAGE8P0CG41 777 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 GPD1P21695 349 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 IL1R2P27930 398 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 MAN1A1P33908 653 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 GRIK1P39086 918 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 ZNF143P52747 638 aaPredicted RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 MRPS25P82663 173 aaKnown RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 MRPS5P82675 430 aaKnown RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 ELAVL2Q12926 359 aaKnown RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 MAPRE1Q15691 268 aaKnown RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 CFAP221Q4G0U5 840 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 RAB41Q5JT25 222 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 RNF19BQ6ZMZ0 732 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 CTAGE6Q86UF2 777 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 SCN4BQ8IWT1 228 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 CTAGE4Q8IX94 777 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 DCP1BQ8IZD4 617 aaKnown RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 SIX6OS1Q8N1H7 587 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 NIPA2Q8N8Q9 360 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 DPF3Q92784 378 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 RNPC3Q96LT9 517 aaKnown RBP21.1■□□□□ 0.97
CLN3-250ENST00000636839 CYLDQ9NQC7 956 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 PCSK1NQ9UHG2 260 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 NR2E1Q9Y466 385 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 CDY1Q9Y6F8 540 aa21.1■□□□□ 0.97
CLN3-250ENST00000636839 LCHNA4D1U4 455 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 LINC00271P0C7V0 271 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 GTF2F1P35269 517 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-250ENST00000636839 DDR2Q16832 855 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 TEX35Q5T0J7 233 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 COL13A1Q5TAT6 717 aaPredicted RBP21.09■□□□□ 0.97
CLN3-250ENST00000636839 SLC26A9Q7LBE3 791 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 SPATA4Q8NEY3 305 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 GPR152Q8TDT2 470 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 FNIP1Q8TF40 1166 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 AUTS2Q8WXX7 1259 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 ZBED2Q9BTP6 218 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 AP1M1Q9BXS5 423 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 DMAP1Q9NPF5 467 aaPredicted RBP21.09■□□□□ 0.97
CLN3-250ENST00000636839 CALCOCO1Q9P1Z2 691 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 TCRBV7S2A1N4TA0A589 114 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 YJEFN3A6XGL0 299 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 E7ENQ6 273 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 FGGP02679 453 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 CPB1P15086 417 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 SNX16P57768 344 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 PITX1P78337 314 aaPredicted RBP21.09■□□□□ 0.97
CLN3-250ENST00000636839 IFRD2Q12894 506 aaPredicted RBP21.09■□□□□ 0.97
CLN3-250ENST00000636839 USP41Q3LFD5 358 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 KCNT1Q5JUK3 1230 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 C4orf50Q6ZRC1 276 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 RSRC2Q7L4I2 434 aaKnown RBP21.09■□□□□ 0.97
CLN3-250ENST00000636839 ZDHHC17Q8IUH5 632 aa21.09■□□□□ 0.97
CLN3-250ENST00000636839 RASGEF1CQ8N431 466 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms