RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LRWD1Q9UFC0 647 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 DNM3Q9UQ16 869 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 BTBD3Q9Y2F9 522 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 TMEM131Q92545 1883 aa15.61■□□□□ 0.09
CLN3-249ENST00000636685 A0A1B0GTW7 788 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 PLK4O00444 970 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 TLX3O43711 291 aaPredicted RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 ADH1CP00326 375 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 ZNF883P0CG24 379 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 PLS3P13797 630 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 ACAT1P24752 427 aaKnown RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 EIF2S3P41091 472 aaKnown RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 SMTNP53814 917 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 BNC1Q01954 994 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 PDIA5Q14554 519 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 SMAD1Q15797 465 aaKnown RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 KYAT1Q16773 422 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 WDR45BQ5MNZ6 344 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 LRRC69Q6ZNQ3 347 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 TRMT11Q7Z4G4 463 aaKnown RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 SCN4BQ8IWT1 228 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 ZCCHC9Q8N567 271 aaKnown RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 NAT16Q8N8M0 369 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 SNX29Q8TEQ0 813 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 LEO1Q8WVC0 666 aaPredicted RBP15.6■□□□□ 0.09
CLN3-249ENST00000636685 KIF2CQ99661 725 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 CCSER1Q9C0I3 900 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 CLMPQ9H6B4 373 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 ABCB6Q9NP58 842 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 SMPD4Q9NXE4 827 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 PTPN13Q12923 2485 aa15.6■□□□□ 0.09
CLN3-249ENST00000636685 KPNA7A9QM74 516 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.59■□□□□ 0.09
CLN3-249ENST00000636685 SLC9A3R1O14745 358 aaPredicted RBP15.59■□□□□ 0.09
CLN3-249ENST00000636685 HLA-EP13747 358 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 NTSR1P30989 418 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 MATKP42679 507 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 LIG4P49917 911 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 FXR2P51116 673 aaKnown RBP eCLIP15.59■□□□□ 0.09
CLN3-249ENST00000636685 HLA-BQ31612 363 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 DBX2Q6ZNG2 339 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 KCNK18Q7Z418 384 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 CD302Q8IX05 232 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 IPO4Q8TEX9 1081 aaKnown RBP15.59■□□□□ 0.09
CLN3-249ENST00000636685 FOXJ1Q92949 421 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 PKMYT1Q99640 499 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 TM6SF1Q9BZW5 370 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 RNF38Q9H0F5 515 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 MIR1-1HGQ9H1L0 117 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 CD248Q9HCU0 757 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 DPP3Q9NY33 737 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 CFAP97Q9P2B7 532 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 CPSF3Q9UKF6 684 aaKnown RBP15.59■□□□□ 0.09
CLN3-249ENST00000636685 GTF3C4Q9UKN8 822 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.59■□□□□ 0.09
CLN3-249ENST00000636685 DERAQ9Y315 318 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 CPQQ9Y646 472 aa15.59■□□□□ 0.09
CLN3-249ENST00000636685 MEI4A8MW99 385 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 FLRT2O43155 660 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 ZBTB24O43167 697 aaPredicted RBP15.58■□□□□ 0.08
CLN3-249ENST00000636685 CER1O95813 267 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 GUCY2CP25092 1073 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 PDE6CP51160 858 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 SLC7A9P82251 487 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 INTS6LQ5JSJ4 861 aaKnown RBP15.58■□□□□ 0.08
CLN3-249ENST00000636685 LY6G5CQ5SRR4 150 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 C10orf76Q5T2E6 689 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 EGFLAMQ63HQ2 1017 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 DHRS13Q6UX07 377 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 PDCL2Q8N4E4 241 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 DNASE2BQ8WZ79 361 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 ACOX2Q99424 681 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 MSTO1Q9BUK6 570 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 DDX43Q9NXZ2 648 aaKnown RBP15.58■□□□□ 0.08
CLN3-249ENST00000636685 MYLKQ15746 1914 aa15.58■□□□□ 0.08
CLN3-249ENST00000636685 UNC79Q9P2D8 2635 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 PP2D1A8MPX8 630 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 E9PAM4 449 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 HNRNPDLO14979 420 aaKnown RBP15.57■□□□□ 0.08
CLN3-249ENST00000636685 TRIM24O15164 1050 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 HCRTO43612 131 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 TULP3O75386 442 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 CDC25AP30304 524 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 USP46P62068 366 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 SEMG2Q02383 582 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 MYO1EQ12965 1108 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 SV2CQ496J9 727 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 GPR155Q7Z3F1 870 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 SPATA2LQ8IUW3 424 aaPredicted RBP15.57■□□□□ 0.08
CLN3-249ENST00000636685 ETFBKMTQ8IXQ9 262 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 NECAB1Q8N987 351 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 KCNV2Q8TDN2 545 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 HNRNPABQ99729 332 aaKnown RBP15.57■□□□□ 0.08
CLN3-249ENST00000636685 ACBD6Q9BR61 282 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 TIPINQ9BVW5 301 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 TRPM5Q9NZQ8 1165 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 L1RE1Q9UN81 338 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 PCDHGB2Q9Y5G2 931 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 RAD54BQ9Y620 910 aa15.57■□□□□ 0.08
CLN3-249ENST00000636685 A0A0B4J269 797 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms