RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 VPS33BQ9H267 617 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 FOXP1Q9H334 677 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-212ENST00000636194 DCTN4Q9UJW0 460 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 INTS1Q8N201 2190 aaKnown RBP6.21□□□□□ -1.42
SCN1A-212ENST00000636194 PPEF1O14829 653 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-212ENST00000636194 GNA15P30679 374 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 HSD17B2P37059 387 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 VAMP7P51809 220 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 GRB14Q14449 540 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 BHLHB9Q6PI77 547 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 TMEM270Q6UE05 265 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 AMIGO1Q86WK6 493 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 TREML1Q86YW5 311 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 SVOPQ8N4V2 548 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 THUMPD3Q9BV44 507 aaKnown RBP6.21□□□□□ -1.42
SCN1A-212ENST00000636194 ABI3Q9P2A4 366 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 SNX7Q9UNH6 387 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 KCNIP3Q9Y2W7 256 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 PITPNM2Q9BZ72 1349 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 SSNA1O43805 119 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 MTA2O94776 668 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 PTPN3P26045 913 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 SCGB2A2Q13296 93 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 MTMR1Q13613 665 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 NFYCQ13952 458 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 PSMD5Q16401 504 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 BMT2Q1RMZ1 405 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 SYDE2Q5VT97 1194 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 FAM133AQ8N9E0 248 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 FAM89AQ96GI7 184 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 EHD1Q9H4M9 534 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 SAMSN1Q9NSI8 373 aaKnown RBP6.21□□□□□ -1.42
SCN1A-212ENST00000636194 GGA3Q9NZ52 723 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 IL1RAPL1Q9NZN1 696 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 WHRNQ9P202 907 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 CARD8Q9Y2G2 431 aa6.21□□□□□ -1.42
SCN1A-212ENST00000636194 KIAA0586Q9BVV6 1533 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 M0QYV0 167 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 MYL12BO14950 172 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 SKAP2O75563 359 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 ANXA6P08133 673 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 FSHRP23945 695 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 TKTP29401 623 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 NOS2P35228 1153 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 SRP54P61011 504 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 ACTR3P61158 418 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 TMED8Q6PL24 325 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 HPS6Q86YV9 775 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 RBBP8NLQ8NC74 664 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 DHX35Q9H5Z1 703 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 TBC1D22BQ9NU19 505 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 TMEM51Q9NW97 253 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GLS2Q9UI32 602 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 MAPRE3Q9UPY8 281 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 ENTPD4Q9Y227 616 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 PCDHGB5Q9Y5G0 923 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 EFCAB10A6NFE3 127 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 TTLL13PA6NNM8 815 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 MTHFD1P11586 935 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 RPA1P27694 616 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 CHRNA5P30532 468 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 PIK3CBP42338 1070 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GPD2P43304 727 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 ACADSBP45954 432 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 CCR4P51679 360 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GPC5P78333 572 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 BDH1Q02338 343 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GCKRQ14397 625 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 TRIP13Q15645 432 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 ZCCHC7Q8N3Z6 543 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 LRRC71Q8N4P6 559 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 DPF3Q92784 378 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 MMP19Q99542 508 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 BTG4Q9NY30 223 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 MRTO4Q9UKD2 239 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 PSME2Q9UL46 239 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 PCDHA4Q9UN74 947 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 SNX8Q9Y5X2 465 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 CFTRP13569 1480 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 SMAPO00193 183 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 STAG3L1P0CL83 205 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 UMPSP11172 480 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 STIP1P31948 543 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 IGFALSP35858 605 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GGCXP38435 758 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 CRKP46108 304 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 BST2Q10589 180 aaKnown RBP6.2□□□□□ -1.42
SCN1A-212ENST00000636194 SREBF2Q12772 1141 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GPR158Q5T848 1215 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 PLA2G4FQ68DD2 849 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 GIPC3Q8TF64 312 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 HPS3Q969F9 1004 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 BATF3Q9NR55 127 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 RDH8Q9NYR8 311 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 UBP1Q9NZI7 540 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 USP21Q9UK80 565 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 LEMD3Q9Y2U8 911 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 FAM25EA8MYX2 175 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 CDC25BP30305 580 aa6.2□□□□□ -1.42
SCN1A-212ENST00000636194 CTDSPL2Q05D32 466 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms