RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PAPSS1O43252 624 aaPredicted RBP22.3■■□□□ 1.16
LIME1-210ENST00000621325 TTC4O95801 387 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 KCNE1P15382 129 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 GDF10P55107 478 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 CCDC14Q49A88 953 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 MDM1Q8TC05 714 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 WNT8BQ93098 351 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 ZFP42Q96MM3 310 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 TMEM109Q9BVC6 243 aa22.3■■□□□ 1.16
LIME1-210ENST00000621325 A6NNZ2 444 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 RASGRF2O14827 1237 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 CD4P01730 458 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 ITGAVP06756 1048 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 ADORA2BP29275 332 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 CCT5P48643 541 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 AUHQ13825 339 aaKnown RBP22.29■■□□□ 1.16
LIME1-210ENST00000621325 ACAP1Q15027 740 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 PTGISQ16647 500 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 TUBB8Q3ZCM7 444 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 TMEM110Q86TL2 294 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 UNC93AQ86WB7 457 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 BBOF1Q8ND07 529 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.29■■□□□ 1.16
LIME1-210ENST00000621325 CACNG4Q9UBN1 327 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 HESX1Q9UBX0 185 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 EFR3BQ9Y2G0 817 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 DUSP11O75319 330 aaKnown RBP22.29■■□□□ 1.16
LIME1-210ENST00000621325 GNAT1P11488 350 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 PECAM1P16284 738 aaPredicted RBP22.29■■□□□ 1.16
LIME1-210ENST00000621325 PCK1P35558 622 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 GNL1P36915 607 aaPredicted RBP22.29■■□□□ 1.16
LIME1-210ENST00000621325 CCDC142Q17RM4 750 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 RFX6Q8HWS3 928 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 NME8Q8N427 588 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 CLEC4CQ8WTT0 213 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 C9orf72Q96LT7 481 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 GABRQQ9UN88 632 aa22.29■■□□□ 1.16
LIME1-210ENST00000621325 PDCD11Q14690 1871 aaKnown RBP22.28■■□□□ 1.16
LIME1-210ENST00000621325 DNALI1O14645 258 aaPredicted RBP22.28■■□□□ 1.16
LIME1-210ENST00000621325 C6orf118Q5T5N4 469 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 TRIB2Q92519 343 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 PTGESO14684 152 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 INHBEP58166 350 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 SLC6A3Q01959 620 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 NBPF20Q3BBV1 942 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 B4GALNT4Q76KP1 1039 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 NGRNQ9NPE2 291 aaKnown RBP22.28■■□□□ 1.16
LIME1-210ENST00000621325 GPATCH2LQ9NWQ4 482 aa22.28■■□□□ 1.16
LIME1-210ENST00000621325 CTSHP09668 335 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 TFE3P19532 575 aaPredicted RBP22.27■■□□□ 1.16
LIME1-210ENST00000621325 TAF6P49848 677 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 CDH6P55285 790 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 TRIM32Q13049 653 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 CCDC38Q502W7 563 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 FAM182AQ5T1J6 154 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 ARHGAP17Q68EM7 881 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 RBM15Q96T37 977 aaKnown RBP eCLIP22.27■■□□□ 1.16
LIME1-210ENST00000621325 EPN3Q9H201 632 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 PPANQ9NQ55 473 aaKnown RBP22.27■■□□□ 1.16
LIME1-210ENST00000621325 GDAP2Q9NXN4 497 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 CDY2AQ9Y6F7 541 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 BRCA2P51587 3418 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 CYBAP13498 195 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 GDF6Q6KF10 455 aaPredicted RBP22.27■■□□□ 1.16
LIME1-210ENST00000621325 SCYL2Q6P3W7 929 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 NPNTQ6UXI9 565 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 ZCCHC9Q8N567 271 aaKnown RBP22.27■■□□□ 1.16
LIME1-210ENST00000621325 ZNF560Q96MR9 790 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 CTNNAL1Q9UBT7 734 aa22.27■■□□□ 1.16
LIME1-210ENST00000621325 TPX2Q9ULW0 747 aaKnown RBP22.27■■□□□ 1.16
LIME1-210ENST00000621325 SETSIPP0DME0 302 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 AFF1P51825 1210 aaKnown RBP22.26■■□□□ 1.15
LIME1-210ENST00000621325 LILRA4P59901 499 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 MRPS6P82932 125 aaKnown RBP22.26■■□□□ 1.15
LIME1-210ENST00000621325 HP1BP3Q5SSJ5 553 aaPredicted RBP22.26■■□□□ 1.15
LIME1-210ENST00000621325 TAF2Q6P1X5 1199 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 CRYBG2Q8N1P7 616 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 TAB3Q8N5C8 712 aaPredicted RBP22.26■■□□□ 1.15
LIME1-210ENST00000621325 APPL2Q8NEU8 664 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 CCHCR1Q8TD31 782 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 FAM172AQ8WUF8 416 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 SNX25Q9H3E2 840 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 NDUFAB1O14561 156 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 PRPSAP2O60256 369 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 NRLP54845 237 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 ZC3H12AQ5D1E8 599 aaKnown RBP22.26■■□□□ 1.15
LIME1-210ENST00000621325 OSTM1Q86WC4 334 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 SLC2A14Q8TDB8 520 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 MTG1Q9BT17 334 aaPredicted RBP22.26■■□□□ 1.15
LIME1-210ENST00000621325 OSBPL7Q9BZF2 842 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 PCDH9Q9HC56 1237 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 GTF2IRD1Q9UHL9 959 aa22.26■■□□□ 1.15
LIME1-210ENST00000621325 FOXO6A8MYZ6 492 aa22.25■■□□□ 1.15
LIME1-210ENST00000621325 ATP2C2O75185 946 aa22.25■■□□□ 1.15
LIME1-210ENST00000621325 ENDOD1O94919 500 aa22.25■■□□□ 1.15
LIME1-210ENST00000621325 CPP00450 1065 aa22.25■■□□□ 1.15
LIME1-210ENST00000621325 TKTP29401 623 aaKnown RBP22.25■■□□□ 1.15
LIME1-210ENST00000621325 GJA9P57773 515 aa22.25■■□□□ 1.15
LIME1-210ENST00000621325 DPYSL3Q14195 570 aa22.25■■□□□ 1.15
LIME1-210ENST00000621325 TNFAIP8L3Q5GJ75 292 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms