RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 MTIF3Q9H2K0 278 aaKnown RBP18.9■□□□□ 0.62
VRK3-225ENST00000601912 PNPLA8Q9NP80 782 aa18.9■□□□□ 0.62
VRK3-225ENST00000601912 ASNSD1Q9NWL6 643 aa18.9■□□□□ 0.62
VRK3-225ENST00000601912 SPG21Q9NZD8 308 aa18.9■□□□□ 0.62
VRK3-225ENST00000601912 PCDHB5Q9Y5E4 795 aa18.9■□□□□ 0.62
VRK3-225ENST00000601912 C2CD4BA6NLJ0 364 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 EFCAB8A8MWE9 144 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 F8VP50 259 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 SART1O43290 800 aaKnown RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 GRAP2O75791 330 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 RNF8O76064 485 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 EFEMP2O95967 443 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 PDGFRAP16234 1089 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 ZNF143P52747 638 aaPredicted RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 TUBB4BP68371 445 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 CLUL1Q15846 466 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 TAS1R1Q7RTX1 841 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 RXFP2Q8WXD0 754 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 HERVK_113Q902F9 699 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 ALG3Q92685 438 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 PIWIL1Q96J94 861 aaKnown RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 MS4A14Q96JA4 679 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 CNPY3Q9BT09 278 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 RHOBTB2Q9BYZ6 727 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 ABI2Q9NYB9 513 aaPredicted RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 INSL6Q9Y581 213 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 SLC4A7Q9Y6M7 1214 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 VWA8A3KMH1 1905 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 UQCRHLA0A096LP55 91 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 UQCRHP07919 91 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 CPB1P15086 417 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 GTF2F1P35269 517 aaKnown RBP eCLIP18.89■□□□□ 0.61
VRK3-225ENST00000601912 PPM1AP35813 382 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 GRIK1P39086 918 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 CACNA2D1P54289 1103 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 EPHB4P54760 987 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 MRPS5P82675 430 aaKnown RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 HTRA4P83105 476 aaPredicted RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 RAB41Q5JT25 222 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 RNF168Q8IYW5 571 aaPredicted RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 FIBCD1Q8N539 461 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 PHOSPHO2Q8TCD6 241 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 ACTRT1Q8TDG2 376 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 SLC9A7Q96T83 725 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 CNGB3Q9NQW8 809 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 ZMYND8Q9ULU4 1186 aaPredicted RBP18.89■□□□□ 0.61
VRK3-225ENST00000601912 PCDHB12Q9Y5F1 795 aa18.89■□□□□ 0.61
VRK3-225ENST00000601912 TBC1D4O60343 1298 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 HSF2BPO75031 334 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 SOD2P04179 222 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 GLI1P08151 1106 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 CYP2F1P24903 491 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 SDC4P31431 198 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 MARCKSL1P49006 195 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 ARPP19P56211 112 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 TAF5Q15542 800 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 HADHQ16836 314 aaKnown RBP18.88■□□□□ 0.61
VRK3-225ENST00000601912 SEL1L2Q5TEA6 688 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 LRRC38Q5VT99 294 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 VSTM1Q6UX27 236 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 RASGEF1CQ8N431 466 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 CLEC4CQ8WTT0 213 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 RIN2Q8WYP3 895 aaPredicted RBP18.88■□□□□ 0.61
VRK3-225ENST00000601912 DPF3Q92784 378 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 KHSRPQ92945 711 aaKnown RBP eCLIP18.88■□□□□ 0.61
VRK3-225ENST00000601912 NAP1L3Q99457 506 aaPredicted RBP18.88■□□□□ 0.61
VRK3-225ENST00000601912 NCAPGQ9BPX3 1015 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 CHST7Q9NS84 486 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 TMEM30AQ9NV96 361 aa18.88■□□□□ 0.61
VRK3-225ENST00000601912 CXXC1Q9P0U4 656 aaPredicted RBP18.88■□□□□ 0.61
VRK3-225ENST00000601912 HHLA1C9JL84 531 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 PGRMC1O00264 195 aaKnown RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 PDE2AO00408 941 aaPredicted RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 DPYSL4O14531 572 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 CTIFO43310 598 aaKnown RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 TADA3O75528 432 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 FLT3P36888 993 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 ITIH3Q06033 890 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 ADCY1Q08828 1119 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 GPR17Q13304 367 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 DCAF12L1Q5VU92 463 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 DAB2IPQ5VWQ8 1189 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 ZNF572Q7Z3I7 529 aaPredicted RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 LRRN4CLQ8ND94 238 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 C2orf15Q8WU43 125 aaKnown RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 PIK3R5Q8WYR1 880 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 UBXN4Q92575 508 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 GOLGA1Q92805 767 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 FAM149B1Q96BN6 582 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 RNPC3Q96LT9 517 aaKnown RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 ULBP1Q9BZM6 244 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 STK39Q9UEW8 545 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 TTC7AQ9ULT0 858 aaPredicted RBP18.87■□□□□ 0.61
VRK3-225ENST00000601912 BACE2Q9Y5Z0 518 aa18.87■□□□□ 0.61
VRK3-225ENST00000601912 TRIM66O15016 1216 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 MAGEA11P43364 429 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 NDUFV1P49821 464 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 TAS2R40P59535 323 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 YWHAZP63104 245 aaKnown RBP18.86■□□□□ 0.61
VRK3-225ENST00000601912 KRT17Q04695 432 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms