RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 PCDHB8Q9UN66 801 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 PCDHA3Q9Y5H8 950 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 F8W810 466 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 LSP1P33241 339 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 FNTAP49354 379 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 CDR1P51861 262 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 DEFB103AP81534 67 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 C1QBPQ07021 282 aaKnown RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 ZNF844Q08AG5 666 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 TRADDQ15628 312 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 PPP1R26Q5T8A7 1209 aaPredicted RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 LIN9Q5TKA1 542 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 DENND1BQ6P3S1 775 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 MICALCLQ6ZW33 695 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 MON1BQ7L1V2 547 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 OTOP2Q7RTS6 562 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 YTHDF3Q7Z739 585 aaKnown RBP12.3□□□□□ -0.44
VRK3-223ENST00000601341 HOOK3Q86VS8 718 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 MAIP1Q8WWC4 291 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 PPM1EQ8WY54 764 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ZNF653Q96CK0 615 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ZDHHC18Q9NUE0 388 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 FAM49BQ9NUQ9 324 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ADAM22Q9P0K1 906 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 HESX1Q9UBX0 185 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 ADAM28Q9UKQ2 775 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 TSPAN16Q9UKR8 245 aa12.3□□□□□ -0.44
VRK3-223ENST00000601341 TDRD15B5MCY1 1934 aaKnown RBP12.29□□□□□ -0.44
VRK3-223ENST00000601341 FAM170AA1A519 330 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 M0QYV0 167 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 HCRTO43612 131 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 CALB1P05937 261 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 GALTP07902 379 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 PTPN1P18031 435 aaKnown RBP12.29□□□□□ -0.44
VRK3-223ENST00000601341 MMP8P22894 467 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 SLC11A1P49279 550 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 ALDH7A1P49419 539 aaKnown RBP12.29□□□□□ -0.44
VRK3-223ENST00000601341 ELAVL2Q12926 359 aaKnown RBP12.29□□□□□ -0.44
VRK3-223ENST00000601341 GOLGA7BQ2TAP0 167 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 OVOS1Q6IE37 1185 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 FOXR1Q6PIV2 292 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 ZNF365Q70YC5 407 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 C16orf59Q7L2K0 433 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 ERICH1Q86X53 443 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 THEM5Q8N1Q8 247 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 WDTC1Q8N5D0 677 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 ZNF689Q96CS4 500 aaPredicted RBP12.29□□□□□ -0.44
VRK3-223ENST00000601341 ACBD6Q9BR61 282 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 C11orf70Q9BRQ4 267 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 TMEM109Q9BVC6 243 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 CNOT10Q9H9A5 744 aaKnown RBP12.29□□□□□ -0.44
VRK3-223ENST00000601341 CDH9Q9ULB4 789 aa12.29□□□□□ -0.44
VRK3-223ENST00000601341 MICAL3Q7RTP6 2002 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 A0A087WUV0 522 aaPredicted RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 ZBBXA8MT70 800 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 NDUFAB1O14561 156 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 SYN3O14994 580 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 CPP00450 1065 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 ACAT1P24752 427 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 MAN1A1P33908 653 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 SLC1A1P43005 524 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 GPD2P43304 727 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 BCAR1P56945 870 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PSMC1P62191 440 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 YWHAHQ04917 246 aaPredicted RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 DHX9Q08211 1270 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 FAM117BQ6P1L5 589 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PSRC1Q6PGN9 363 aaPredicted RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 MMS22LQ6ZRQ5 1243 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 SYDE1Q6ZW31 735 aaPredicted RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 JAMLQ86YT9 394 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 ANKRD52Q8NB46 1076 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 UBA3Q8TBC4 463 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 ZNF564Q8TBZ8 553 aaPredicted RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 SYT15Q9BQS2 421 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 NEUROG2Q9H2A3 272 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PABPC3Q9H361 631 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 CNOT8Q9UFF9 292 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 MTRF1LQ9UGC7 380 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 SLC12A6Q9UHW9 1150 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 SF3B1O75533 1304 aaKnown RBP eCLIP12.28□□□□□ -0.443e-6■■■■■ 137.9
VRK3-223ENST00000601341 CARNS1A5YM72 827 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 MYO1FO00160 1098 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 ATP2C2O75185 946 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 CAPN15O75808 1086 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 FAM107AO95990 144 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 SETSIPP0DME0 302 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 CCDC130P13994 396 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 COMTP21964 271 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PTGIRP43119 386 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 RWDD2BP57060 319 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 SLC8A3P57103 927 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PTP4A2Q12974 167 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 BYSLQ13895 437 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 SLMAPQ14BN4 828 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 PKDCCQ504Y2 493 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 KCTD16Q68DU8 428 aa12.28□□□□□ -0.44
VRK3-223ENST00000601341 DDX42Q86XP3 938 aaKnown RBP eCLIP12.28□□□□□ -0.44
VRK3-223ENST00000601341 CMTR2Q8IYT2 770 aaKnown RBP12.28□□□□□ -0.44
VRK3-223ENST00000601341 PRELID2Q8N945 189 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms