RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 KRT19P08727 400 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 TDGF1P13385 188 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ATF6P18850 670 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 GDI1P31150 447 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 PNPLA4P41247 253 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 UBASH3AP57075 661 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 MYL7Q01449 175 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 PFKPQ01813 784 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 BIRC3Q13489 604 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 EXOC3L4Q17RC7 722 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 SLC39A12Q504Y0 691 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 CYP4A22Q5TCH4 519 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 KLHDC7AQ5VTJ3 777 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 SMYD5Q6GMV2 418 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 LAIR1Q6GTX8 287 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 IQCEQ6IPM2 695 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 GBP6Q6ZN66 633 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 DNAJB7Q7Z6W7 309 aaPredicted RBP9.32□□□□□ -0.92
TRIM28-214ENST00000600840 OSTM1Q86WC4 334 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 CREBRFQ8IUR6 639 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ARHGEF19Q8IW93 802 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 KAT5Q92993 513 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 COL26A1Q96A83 441 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 CLDN23Q96B33 292 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 KREMEN1Q96MU8 473 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 TRMT61BQ9BVS5 477 aaKnown RBP9.32□□□□□ -0.92
TRIM28-214ENST00000600840 OSBPL6Q9BZF3 934 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 XPO4Q9C0E2 1151 aaKnown RBP9.32□□□□□ -0.92
TRIM28-214ENST00000600840 GPR88Q9GZN0 384 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ZCWPW1Q9H0M4 648 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 BRD9Q9H8M2 597 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 IL21Q9HBE4 155 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ASAH2Q9NR71 780 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 IFNKQ9P0W0 207 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 RAB23Q9ULC3 237 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ZMIZ1Q9ULJ6 1067 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 MAFFQ9ULX9 164 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 NDRG2Q9UN36 371 aaKnown RBP9.32□□□□□ -0.92
TRIM28-214ENST00000600840 L1RE1Q9UN81 338 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 CNTN6Q9UQ52 1028 aa9.32□□□□□ -0.92
TRIM28-214ENST00000600840 ATRXP46100 2492 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TULP1O00294 542 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-214ENST00000600840 PHACTR2O75167 634 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 RETP07949 1114 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ODC1P11926 461 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 PSMC3P17980 439 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 SOX9P48436 509 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GPR15P49685 360 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 CDH8P55286 799 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 NOP14P78316 857 aaKnown RBP9.31□□□□□ -0.92
TRIM28-214ENST00000600840 SHC2P98077 582 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 CYP4F8P98187 520 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GCNT1Q02742 428 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 UBXN1Q04323 297 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TRPC3Q13507 836 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GAS6Q14393 721 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 SYCP1Q15431 976 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF699Q32M78 642 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 WDR72Q3MJ13 1102 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 SV2CQ496J9 727 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GJB7Q6PEY0 223 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TMEM150AQ86TG1 271 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ARID3BQ8IVW6 561 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ELMOD1Q8N336 334 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 PDCL2Q8N4E4 241 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TOP6BLQ8N6T0 577 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TTC8Q8TAM2 541 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GIPC2Q8TF65 315 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ZFYVE19Q96K21 471 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 PPP1R9BQ96SB3 815 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 PKMYT1Q99640 499 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ARID3AQ99856 593 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TTYH3Q9C0H2 523 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 TRPV4Q9HBA0 871 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GCNT4Q9P109 453 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 SNX9Q9Y5X1 595 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 FAM208BQ5VWN6 2430 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 GREB1Q4ZG55 1949 aa9.31□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF638Q14966 1978 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 PRAMEF12O95522 483 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 SERPINC1P01008 464 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 HAPLN1P10915 354 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 WARSP23381 471 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 LMO2P25791 158 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 GABRR2P28476 465 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 PIK3CAP42336 1068 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 MAGEA9P43362 315 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 RPS9P46781 194 aaKnown RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ALDH1A3P47895 512 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF75DP51815 510 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 EPHB3P54753 998 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 TPM4P67936 248 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 INCA1Q0VD86 236 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 MYO1EQ12965 1108 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 TBX2Q13207 712 aaPredicted RBP9.3□□□□□ -0.92
TRIM28-214ENST00000600840 CCDC6Q16204 474 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 CSRP2Q16527 193 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 MGAT5BQ3V5L5 792 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 FIGNQ5HY92 759 aa9.3□□□□□ -0.92
TRIM28-214ENST00000600840 ZNF667Q5HYK9 610 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms