RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 EHD2Q9NZN4 543 aa16.09■□□□□ 0.17
LIG1-219ENST00000600055 GMIPQ9P107 970 aa16.09■□□□□ 0.17
LIG1-219ENST00000600055 CHORDC1Q9UHD1 332 aaPredicted RBP16.09■□□□□ 0.17
LIG1-219ENST00000600055 FBXL21Q9UKT6 434 aa16.09■□□□□ 0.17
LIG1-219ENST00000600055 CA14Q9ULX7 337 aa16.09■□□□□ 0.17
LIG1-219ENST00000600055 CCL26Q9Y258 94 aa16.09■□□□□ 0.17
LIG1-219ENST00000600055 PRR33A8MZF0 331 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 TULP2O00295 520 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 DPYSL4O14531 572 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 PAEPP09466 180 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 KRT5P13647 590 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 PSMC3P17980 439 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 BRD2P25440 801 aaKnown RBP16.08■□□□□ 0.16
LIG1-219ENST00000600055 WEE1P30291 646 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 AVPR1AP37288 418 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 PGFP49763 221 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 ZNF132P52740 706 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 ARHGAP44Q17R89 818 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 MFSD6LQ8IWD5 586 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 ANKRD52Q8NB46 1076 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 RIN3Q8TB24 985 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 PBXIP1Q96AQ6 731 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 SLITRK1Q96PX8 696 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 TRMT61BQ9BVS5 477 aaKnown RBP16.08■□□□□ 0.16
LIG1-219ENST00000600055 APEX2Q9UBZ4 518 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 TSPAN16Q9UKR8 245 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 TRIOO75962 3097 aa16.08■□□□□ 0.16
LIG1-219ENST00000600055 TRAV19A0A0A6YYK7 116 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 KRBA1A5PL33 1030 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 O00370 1275 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 LETM1O95202 739 aaPredicted RBP16.07■□□□□ 0.16
LIG1-219ENST00000600055 ZNF18P17022 549 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 GDI1P31150 447 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 MFAP3P55082 362 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 DHX40Q8IX18 779 aaKnown RBP16.07■□□□□ 0.16
LIG1-219ENST00000600055 SIX5Q8N196 739 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 UBA3Q8TBC4 463 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 DEPDC1BQ8WUY9 529 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 E2F7Q96AV8 911 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 ACP6Q9NPH0 428 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 COMMD8Q9NX08 183 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 WNT16Q9UBV4 365 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 ZMYM5Q9UJ78 669 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 DNAJC12Q9UKB3 198 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 CNTN6Q9UQ52 1028 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 GREB1Q4ZG55 1949 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 TECTAO75443 2155 aa16.07■□□□□ 0.16
LIG1-219ENST00000600055 FAM92AA1XBS5 289 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 SOBPA7XYQ1 873 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 BECN2A8MW95 431 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 CYP26A1O43174 497 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 CKMP06732 381 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 USP17L7P0C7H9 530 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 HDCP19113 662 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 PPP3CCP48454 512 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 KIF11P52732 1056 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 COPB1P53618 953 aaKnown RBP16.06■□□□□ 0.16
LIG1-219ENST00000600055 PDE4CQ08493 712 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 ENOSF1Q7L5Y1 443 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 PIGZQ86VD9 579 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 CELF5Q8N6W0 485 aaKnown RBP16.06■□□□□ 0.16
LIG1-219ENST00000600055 TTC16Q8NEE8 873 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 ZFYVE19Q96K21 471 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 BPIFA3Q9BQP9 254 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 LSM14BQ9BX40 385 aaKnown RBP16.06■□□□□ 0.16
LIG1-219ENST00000600055 NAT10Q9H0A0 1025 aaKnown RBP16.06■□□□□ 0.16
LIG1-219ENST00000600055 RNF38Q9H0F5 515 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 FBXO44Q9H4M3 255 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 BRD9Q9H8M2 597 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 PNPLA8Q9NP80 782 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 TDP1Q9NUW8 608 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 OBP2AQ9NY56 170 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 HESX1Q9UBX0 185 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 LIMA1Q9UHB6 759 aaKnown RBP16.06■□□□□ 0.16
LIG1-219ENST00000600055 KIAA1257Q9ULG3 409 aa16.06■□□□□ 0.16
LIG1-219ENST00000600055 ZNF263O14978 683 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 OAS1P00973 400 aaKnown RBP16.05■□□□□ 0.16
LIG1-219ENST00000600055 ZDHHC11BP0C7U3 371 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 PNMA6AP0CW24 399 aaPredicted RBP16.05■□□□□ 0.16
LIG1-219ENST00000600055 ATP1A3P13637 1013 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 CDK11BP21127 795 aaKnown RBP16.05■□□□□ 0.16
LIG1-219ENST00000600055 USP8P40818 1118 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 KLK7P49862 253 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 ZNF165P49910 485 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 BCAT1P54687 386 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 ZXDBP98169 803 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 FCHO2Q0JRZ9 810 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 ZSCAN23Q3MJ62 389 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 PKDCCQ504Y2 493 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 SLC44A4Q53GD3 710 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 LCLAT1Q6UWP7 414 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 BMP8AQ7Z5Y6 402 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 YAF2Q8IY57 180 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 PDZD8Q8NEN9 1154 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 BPIFB1Q8TDL5 484 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 OVCA2Q8WZ82 227 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 SHC3Q92529 594 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 CCSER2Q9H7U1 834 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 ARHGEF3Q9NR81 526 aa16.05■□□□□ 0.16
LIG1-219ENST00000600055 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms